Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1077
(637 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B4335 Cluster: PREDICTED: similar to eukaryotic... 96 5e-19
UniRef50_Q9W4X7 Cluster: CG8636-PA; n=8; Endopterygota|Rep: CG86... 84 2e-15
UniRef50_A7T5A6 Cluster: Predicted protein; n=1; Nematostella ve... 81 2e-14
UniRef50_Q9VDM6 Cluster: CG10881-PA; n=2; Sophophora|Rep: CG1088... 75 1e-12
UniRef50_O75821 Cluster: Eukaryotic translation initiation facto... 71 2e-11
UniRef50_Q5DF32 Cluster: SJCHGC06618 protein; n=2; Schistosoma j... 54 2e-06
UniRef50_Q4P7G1 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_Q6BT10 Cluster: Debaryomyces hansenii chromosome D of s... 49 8e-05
UniRef50_A7TJ86 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q6C747 Cluster: Yarrowia lipolytica chromosome E of str... 46 0.001
UniRef50_Q19706 Cluster: Probable eukaryotic translation initiat... 46 0.001
UniRef50_P78795 Cluster: Probable eukaryotic translation initiat... 45 0.002
UniRef50_Q016G8 Cluster: Initiation factor 3g; n=2; Ostreococcus... 43 0.007
UniRef50_Q9FI86 Cluster: Eukaryotic translation initiation facto... 42 0.009
UniRef50_Q5K9M4 Cluster: Eukaryotic translation initiation facto... 42 0.016
UniRef50_A7PNS9 Cluster: Chromosome chr8 scaffold_23, whole geno... 40 0.050
UniRef50_Q04067 Cluster: Eukaryotic translation initiation facto... 38 0.15
UniRef50_Q5GAI2 Cluster: Deoxyribonucleoside kinase/thymidine ki... 35 1.4
UniRef50_Q97IB5 Cluster: Predicted kinase related to hydroxyacet... 33 4.4
UniRef50_Q0HEX3 Cluster: DEAD/DEAH box helicase domain protein; ... 33 5.8
>UniRef50_UPI00015B4335 Cluster: PREDICTED: similar to eukaryotic
translation initiation factor 3 subunit 4; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to eukaryotic
translation initiation factor 3 subunit 4 - Nasonia
vitripennis
Length = 293
Score = 96.3 bits (229), Expect = 5e-19
Identities = 44/74 (59%), Positives = 52/74 (70%)
Frame = +3
Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
KR VSKSIA RK W+KFGDS +D PGPNPATT +AEDVFMQF++ KEE + ++ LD L
Sbjct: 60 KRTVSKSIAVRKNWAKFGDSTNDGPGPNPATTVIAEDVFMQFLSGKEEDNKVEEDALDKL 119
Query: 435 KPPSSNVIFKCRTC 476
K KCR C
Sbjct: 120 KSLVEKGAVKCRNC 133
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/54 (62%), Positives = 42/54 (77%), Gaps = 2/54 (3%)
Frame = +1
Query: 100 EFQASWADEVEIDQG--VLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
E +SWADEVE D+G LPPPS + EN KI+TEYK + DNKKVK+VRTY++E
Sbjct: 7 EVSSSWADEVE-DEGNITLPPPSIIYENDFKIMTEYKLNEDNKKVKVVRTYRVE 59
>UniRef50_Q9W4X7 Cluster: CG8636-PA; n=8; Endopterygota|Rep:
CG8636-PA - Drosophila melanogaster (Fruit fly)
Length = 269
Score = 84.2 bits (199), Expect = 2e-15
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = +1
Query: 85 MPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 252
MP E ++SWADEVE+D G LPP +E VENG K VTEYKY+ D+KK K+VRTYKI
Sbjct: 1 MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKVVRTYKI 56
Score = 81.8 bits (193), Expect = 1e-14
Identities = 40/74 (54%), Positives = 55/74 (74%)
Frame = +3
Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
K+VV K++AKR+TW+KFGDS +DKPGPN TT V+E++ MQF+ SKE+ ++ +D LD
Sbjct: 58 KQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFLNSKED-EKANDPLLD-- 114
Query: 435 KPPSSNVIFKCRTC 476
P+ N I KCR C
Sbjct: 115 --PTKN-IAKCRIC 125
>UniRef50_A7T5A6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 168
Score = 81.0 bits (191), Expect = 2e-14
Identities = 41/74 (55%), Positives = 50/74 (67%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R V+K IAKRK W KFGDS +DKPGPN TTNV +DVF+ +TS +E+ PD E D LK
Sbjct: 36 RRVAKEIAKRKLWKKFGDSKNDKPGPNKTTTNVCDDVFL-ILTSNKEN--PDATEEDPLK 92
Query: 438 PPSSNVIFKCRTCQ 479
S I +CR C+
Sbjct: 93 KLSGQKIVQCRICK 106
>UniRef50_Q9VDM6 Cluster: CG10881-PA; n=2; Sophophora|Rep:
CG10881-PA - Drosophila melanogaster (Fruit fly)
Length = 273
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = +3
Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
K++V K++A+R+ W KFGDS SDKPGPN TT +E++FMQFI SK+ Q + +LD
Sbjct: 56 KQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQFIGSKDFDQ-THETQLD-- 112
Query: 435 KPPSSNVIFKCRTC 476
P N I KCR C
Sbjct: 113 --PGKN-IAKCRIC 123
Score = 64.1 bits (149), Expect = 3e-09
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +1
Query: 103 FQASWADEVEIDQ-GVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRVL 279
F SWADEV+ D LPP +E ++ K VTEYK+++D KKVK+VRT+KIE + + +
Sbjct: 4 FVTSWADEVDADYVDGLPPSNEYIKGDFKYVTEYKFNDDGKKVKVVRTFKIEKQIVPKAV 63
>UniRef50_O75821 Cluster: Eukaryotic translation initiation factor 3
subunit 4; n=36; Eumetazoa|Rep: Eukaryotic translation
initiation factor 3 subunit 4 - Homo sapiens (Human)
Length = 320
Score = 70.9 bits (166), Expect = 2e-11
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>UniRef50_Q5DF32 Cluster: SJCHGC06618 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC06618 protein - Schistosoma
japonicum (Blood fluke)
Length = 281
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/81 (35%), Positives = 40/81 (49%)
Frame = +3
Query: 237 QDIQN*KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDD 416
++ Q KRVV+ +A RK W KFG S SD PG N A T A+ V MQ + +++ Q
Sbjct: 47 KEYQKEKRVVASRVADRKKWRKFGASKSDPPGGNLANTYPADIVTMQIVQARQPEQEQKR 106
Query: 417 GELDGLKPPSSNVIFKCRTCQ 479
E K + C C+
Sbjct: 107 QEEVNAKVKLGEPVVACSYCK 127
>UniRef50_Q4P7G1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 308
Score = 53.6 bits (123), Expect = 4e-06
Identities = 23/75 (30%), Positives = 44/75 (58%)
Frame = +3
Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
K V+ +A+RKTW+KFG GP+ ATT + E+V ++ +++ ++ P+ ++D +
Sbjct: 71 KTKVNHEVAERKTWTKFGQEKGKAAGPHSATTTIGENVVLK-MSAGNKTAEPEVDDMDKM 129
Query: 435 KPPSSNVIFKCRTCQ 479
+ +N CR C+
Sbjct: 130 RQQLANKRIVCRLCK 144
Score = 36.3 bits (80), Expect = 0.62
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 112 SWADEV-EIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYK 249
+WADE E G P E E NG+K+V EY+ + D KK+KI R K
Sbjct: 19 NWADEFDEPVVGDAPRIEERDEGNGVKVVIEYRTNPDGKKIKITRRVK 66
>UniRef50_Q6BT10 Cluster: Debaryomyces hansenii chromosome D of
strain CBS767 of Debaryomyces hansenii; n=6;
Saccharomycetales|Rep: Debaryomyces hansenii chromosome
D of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 276
Score = 49.2 bits (112), Expect = 8e-05
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
K V IA+RK W+K+G + PGP+ TT + E V ++ TS +E ++ ++ +
Sbjct: 55 KEKVHPLIAQRKNWAKYGKEKNTPPGPDTRTTQLGEKVELKLGTSWKEIEKQEEESKEEQ 114
Query: 435 KPP-SSNVIFKCRTC 476
K S KCRTC
Sbjct: 115 KAQLVSTQRIKCRTC 129
>UniRef50_A7TJ86 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 131
Score = 46.8 bits (106), Expect = 4e-04
Identities = 30/86 (34%), Positives = 44/86 (51%)
Frame = +3
Query: 225 SENCQDIQN*KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQ 404
S+N ++I +RV + RK W+K+G A+ PGP TTN E+V FI SK +
Sbjct: 33 SQNFKEINVLERV-DPVVDARKKWAKYGAEANSPPGPGYDTTNPGENV--TFILSKNWRE 89
Query: 405 RPDDGELDGLKPPSSNVIFKCRTCQE 482
+ E + LK + V CR C +
Sbjct: 90 LTEIEEANRLK-KNPKVYISCRACSQ 114
>UniRef50_Q6C747 Cluster: Yarrowia lipolytica chromosome E of strain
CLIB 122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome E of
strain CLIB 122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 294
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED-VFMQFITSKEESQRPDDGELDGLKP 440
V +A+R W+K+G PGPN TT + ED VF+ + S + + ++ E P
Sbjct: 70 VLNCVAERSKWTKYGKELGAPPGPNRMTTTIGEDIVFVLGLKSDQPEEEVEEEEAAAAAP 129
Query: 441 -PSSNVIFKCRTCQ 479
+ KCR CQ
Sbjct: 130 RVGEDKGVKCRLCQ 143
>UniRef50_Q19706 Cluster: Probable eukaryotic translation initiation
factor 3 subunit 4; n=2; Caenorhabditis|Rep: Probable
eukaryotic translation initiation factor 3 subunit 4 -
Caenorhabditis elegans
Length = 256
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/47 (46%), Positives = 27/47 (57%)
Frame = +3
Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQ 404
V K +A RK W KFG + GP ATT VAE+V MQF ++ Q
Sbjct: 56 VPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQ 102
>UniRef50_P78795 Cluster: Probable eukaryotic translation initiation
factor 3 RNA-binding subunit; n=1; Schizosaccharomyces
pombe|Rep: Probable eukaryotic translation initiation
factor 3 RNA-binding subunit - Schizosaccharomyces pombe
(Fission yeast)
Length = 282
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDG 431
V ++A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L
Sbjct: 61 VQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAA 118
Query: 432 LK-PPSSNVIFKCRTCQ 479
K + + +CR C+
Sbjct: 119 AKVKAKGSSVVRCRACK 135
Score = 33.5 bits (73), Expect = 4.4
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 115 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276
WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + + V+ +RV
Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIR-KTVITERV 61
>UniRef50_Q016G8 Cluster: Initiation factor 3g; n=2;
Ostreococcus|Rep: Initiation factor 3g - Ostreococcus
tauri
Length = 311
Score = 42.7 bits (96), Expect = 0.007
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 443
V+ + +RKTW KFGD+ KPG T E++F++ + +S+ +
Sbjct: 97 VTPGMLERKTWEKFGDAKRYKPGDESMTAVSLEEIFLEKTRVQPKSELEKASDPLAAMAS 156
Query: 444 SSNVIFKCRTC 476
+ + CRTC
Sbjct: 157 AQTSLLVCRTC 167
>UniRef50_Q9FI86 Cluster: Eukaryotic translation initiation factor 3
subunit-like protein; n=12; Magnoliophyta|Rep:
Eukaryotic translation initiation factor 3 subunit-like
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 308
Score = 42.3 bits (95), Expect = 0.009
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 121 DEVEIDQGVLPPPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
DE E D L PP +++ +NG+K V EYK++ ++KKVKI T +++
Sbjct: 18 DEEEGDYDFLLPPKQMISPDQNGVKKVIEYKFNEEDKKVKITTTTRVQ 65
Score = 40.3 bits (90), Expect = 0.038
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFIT---SKEESQRPDDGEL 425
KR ++K +R++W+KFGD+A ++ + T ED+ ++ I S E +
Sbjct: 66 KRALTKQAVERRSWNKFGDAAHEE-SSSYLTMRSTEDIILERIRAPGSNAEQSTVSGDSM 124
Query: 426 DGLKPPSSNVIFKCRTCQE 482
L P + V+ CR CQ+
Sbjct: 125 SQLGKPGA-VLMVCRLCQK 142
>UniRef50_Q5K9M4 Cluster: Eukaryotic translation initiation factor
3, subunit 4 delta, 44kDa, putative; n=1; Filobasidiella
neoformans|Rep: Eukaryotic translation initiation factor
3, subunit 4 delta, 44kDa, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 290
Score = 41.5 bits (93), Expect = 0.016
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +3
Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 443
V++++A+RK W KFG PGP+ TT + E++ + I + QR + +K P
Sbjct: 63 VTQTMAERKQWPKFGLDKGKPPGPDRKTTIIGENLHFK-IAPISKIQRVEPEPETAVKAP 121
Query: 444 SSNVIFKCRTC 476
+ + CR C
Sbjct: 122 TGKAVV-CRLC 131
Score = 37.9 bits (84), Expect = 0.20
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 85 MPVAEEFQASWA-DEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVR 240
M +++ WA D+V+ D+ LPP +E + NG+ + +KY+ D++KVK+ R
Sbjct: 1 MADSKQSNRDWAADDVDADE--LPPTTESTDANGITTIVSWKYNADDQKVKVTR 52
>UniRef50_A7PNS9 Cluster: Chromosome chr8 scaffold_23, whole genome
shotgun sequence; n=4; Magnoliophyta|Rep: Chromosome
chr8 scaffold_23, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 293
Score = 39.9 bits (89), Expect = 0.050
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 121 DEVEIDQGVLPPPSEVV--ENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276
D+ E +LPPP + +NG+K V EYK+++D KVKI T ++ + R+
Sbjct: 20 DDTEDLDFLLPPPQVIGPDDNGIKKVIEYKFNDDGDKVKITTTTRVRKLANARL 73
>UniRef50_Q04067 Cluster: Eukaryotic translation initiation factor 3
RNA-binding subunit; n=6; Saccharomycetales|Rep:
Eukaryotic translation initiation factor 3 RNA-binding
subunit - Saccharomyces cerevisiae (Baker's yeast)
Length = 274
Score = 38.3 bits (85), Expect = 0.15
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 443
V KS+A+RK W K+G GP+ T + E+V ++ + +++ ++ + K
Sbjct: 45 VHKSVAERKNWHKYGSEKGSPAGPSAVTARLGEEVELRLSRNWKQA---EEERIQKEKAS 101
Query: 444 SSNVIFKCRTC 476
+ +CR C
Sbjct: 102 LTKTGLQCRLC 112
>UniRef50_Q5GAI2 Cluster: Deoxyribonucleoside kinase/thymidine
kinase; n=2; Singapore grouper iridovirus|Rep:
Deoxyribonucleoside kinase/thymidine kinase - Grouper
iridovirus
Length = 191
Score = 35.1 bits (77), Expect = 1.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1
Query: 46 CKIAIGV*NICFDMPVAEEF----QASWADEVEIDQGVLPPPSEVVENGLKIVTEY 201
C++ IG + F+ ++ E+ A + D ++ LPP EVVEN +K++ +Y
Sbjct: 134 CRVRIGNRDREFEQAISNEYLTALHAQFIDAADVKLSGLPPKEEVVENFIKLLAQY 189
>UniRef50_Q97IB5 Cluster: Predicted kinase related to hydroxyacetone
kinase, YLOV ortholog; n=6; Clostridium|Rep: Predicted
kinase related to hydroxyacetone kinase, YLOV ortholog -
Clostridium acetobutylicum
Length = 547
Score = 33.5 bits (73), Expect = 4.4
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 109 ASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIENV 261
A+ A E+ D+ V+ P++ + G+ +TE++YD D +K K T IE V
Sbjct: 394 ANQASELS-DKNVVVIPTKTIPQGITCMTEFEYDGDVEKNKEKLTKAIEKV 443
>UniRef50_Q0HEX3 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Shewanella sp. MR-4|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 717
Score = 33.1 bits (72), Expect = 5.8
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 91 VAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQ 270
+ F ++ +EI + +EV+ +G K +TE Y N N+ +KI K + L
Sbjct: 484 ILNTFSKTYNIPIEIIKKHQSYKAEVIADGYKFLTELSYHNKNELIKIKTPKKHQLELLT 543
Query: 271 RVLPNVKLGA 300
+ V+ GA
Sbjct: 544 EFIKKVEYGA 553
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,288,462
Number of Sequences: 1657284
Number of extensions: 10185006
Number of successful extensions: 32177
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 30892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32161
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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