Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1077
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.9  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   8.6  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 250 IENVLFQRVLPNVKLGANLEIQPAT 324
           +EN+  +RVLP V+ G    + PAT
Sbjct: 21  LENIRDRRVLPTVEPGYLRPLIPAT 45


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +1

Query: 568 CCCN-KYIRLVCGRIPGRDQPC 630
           C C+ KY+ + C RI    Q C
Sbjct: 777 CTCDAKYLEIKCKRIYNEKQCC 798


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 282 KRKTWSKFGDSASDKPGPNPATTNVAED 365
           KRKTW    DS S     +P   + + D
Sbjct: 105 KRKTWKVEEDSPSPTSSVSPEVKDSSRD 132


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 202 KYDNDNKKVKIVRTYKIENVLFQRVL 279
           K  ND  ++   R +KI+N L   +L
Sbjct: 193 KLSNDKLEITACRLFKIDNSLILDLL 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,343
Number of Sequences: 336
Number of extensions: 2786
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)