BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1077 (637 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 45 1e-05 SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.14 SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 3.0 SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.9 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.1 >SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual Length = 282 Score = 44.8 bits (101), Expect = 1e-05 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Frame = +3 Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDG 431 V ++A+RK W KFG A G + TT+V E+V ++ + T+KEE Q D+ L Sbjct: 61 VQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAA 118 Query: 432 LK-PPSSNVIFKCRTCQ 479 K + + +CR C+ Sbjct: 119 AKVKAKGSSVVRCRACK 135 Score = 33.5 bits (73), Expect = 0.026 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +1 Query: 115 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276 WAD+ + G+ P + +N G K + E++ D++ KKVK+ R + + V+ +RV Sbjct: 9 WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIR-KTVITERV 61 >SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 1752 Score = 31.1 bits (67), Expect = 0.14 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +3 Query: 384 TSKEESQRPDDGELDGLKPPSSNVIFKCRTCQETI*HCIVHSAH 515 T E QRP G L + + + FKC+TC ET+ C H H Sbjct: 42 TMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGETMADCPGHFGH 85 >SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 26.6 bits (56), Expect = 3.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 124 EVEIDQGVLPPPSEVVENGLKIVTEYKY 207 EVE++ V+ P S EN + V +Y Y Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141 >SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 349 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 173 STTSEGGGSTPWSISTSSAQEA*NSSATGMS 81 STTS +TP + S+SS+ + +SS++ S Sbjct: 131 STTSSSSSATPSTTSSSSSSSSSSSSSSSKS 161 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 25.0 bits (52), Expect = 9.1 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%) Frame = +3 Query: 219 QESENCQDIQN*--KRVVSKSIAKRKTWSKFGDSASD------KPGPNPATTNVAEDVFM 374 +E ++ +D N K+ KS RK + G S+S P+TTN + + Sbjct: 1215 EEEQSSRDFVNRTKKKPRGKSTGTRKPRAIAGSSSSTAVKKEASSESKPSTTNRKQQTLL 1274 Query: 375 QFITSKEESQRPD 413 +F SKE + D Sbjct: 1275 EFAASKEPEKSSD 1287 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,379,847 Number of Sequences: 5004 Number of extensions: 43601 Number of successful extensions: 126 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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