BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1077 (637 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_1015 + 33512023-33512359,33513550-33514082 42 5e-04 02_05_1014 + 33510108-33510471,33510857-33511362 31 0.58 12_01_0964 + 9685989-9686459 29 4.1 04_04_1575 + 34548774-34549109,34549979-34550185 28 5.4 04_03_0872 + 20452534-20453271 28 5.4 >02_05_1015 + 33512023-33512359,33513550-33514082 Length = 289 Score = 41.5 bits (93), Expect = 5e-04 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%) Frame = +1 Query: 115 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276 W + E D+G +LPP S ENG K V EY++D+ KVK+ RT+++ + R+ Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71 Score = 38.3 bits (85), Expect = 0.005 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +3 Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 443 +SKS +R++W KFGD+ + G + E V + +++ P D L Sbjct: 71 LSKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASK 129 Query: 444 SSNVIFKCRTC 476 S V+ CRTC Sbjct: 130 SGAVLMVCRTC 140 >02_05_1014 + 33510108-33510471,33510857-33511362 Length = 289 Score = 31.5 bits (68), Expect = 0.58 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +1 Query: 154 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276 PP V+ ENG+K EY+ + + K V++ T ++ V RV Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRV 79 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +3 Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ 377 V+K A+R+ W+KFGD+A + T E++ ++ Sbjct: 79 VTKRAAERRGWAKFGDAAHNDDAGARLTVVSPEEIVLE 116 >12_01_0964 + 9685989-9686459 Length = 156 Score = 28.7 bits (61), Expect = 4.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = -1 Query: 154 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 17 VE+ QS Q R +++QQQ C+ + I Q C S +VI+ + Sbjct: 58 VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105 >04_04_1575 + 34548774-34549109,34549979-34550185 Length = 180 Score = 28.3 bits (60), Expect = 5.4 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +1 Query: 82 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 252 D+PV +F A W + V+ +E E LKIV K D+D +++ YK+ Sbjct: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137 >04_03_0872 + 20452534-20453271 Length = 245 Score = 28.3 bits (60), Expect = 5.4 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 395 FLTGDELHEDIFSYISSSRVRP 330 F+ GDELHED F + SS P Sbjct: 31 FVAGDELHEDDFLFSSSPAAPP 52 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,639,361 Number of Sequences: 37544 Number of extensions: 282923 Number of successful extensions: 823 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 823 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1561213104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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