Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1077
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1015 + 33512023-33512359,33513550-33514082                       42   5e-04
02_05_1014 + 33510108-33510471,33510857-33511362                       31   0.58 
12_01_0964 + 9685989-9686459                                           29   4.1  
04_04_1575 + 34548774-34549109,34549979-34550185                       28   5.4  
04_03_0872 + 20452534-20453271                                         28   5.4  

>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +1

Query: 115 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276
           W +  E D+G    +LPP   S   ENG K V EY++D+   KVK+ RT+++  +   R+
Sbjct: 12  WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +3

Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 443
           +SKS  +R++W KFGD+  +  G      +  E V  +      +++ P     D L   
Sbjct: 71  LSKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASK 129

Query: 444 SSNVIFKCRTC 476
           S  V+  CRTC
Sbjct: 130 SGAVLMVCRTC 140


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 154 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRV 276
           PP  V+   ENG+K   EY+ + + K V++  T ++  V   RV
Sbjct: 36  PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRV 79



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ 377
           V+K  A+R+ W+KFGD+A +       T    E++ ++
Sbjct: 79  VTKRAAERRGWAKFGDAAHNDDAGARLTVVSPEEIVLE 116


>12_01_0964 + 9685989-9686459
          Length = 156

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 154 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 17
           VE+   QS   Q R  +++QQQ C+ +  I Q   C    S +VI+ +
Sbjct: 58  VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105


>04_04_1575 + 34548774-34549109,34549979-34550185
          Length = 180

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 82  DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 252
           D+PV  +F A W     +   V+   +E  E  LKIV   K D+D    +++  YK+
Sbjct: 85  DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137


>04_03_0872 + 20452534-20453271
          Length = 245

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 395 FLTGDELHEDIFSYISSSRVRP 330
           F+ GDELHED F + SS    P
Sbjct: 31  FVAGDELHEDDFLFSSSPAAPP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,361
Number of Sequences: 37544
Number of extensions: 282923
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)