Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1077
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)                 46   3e-05
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)              29   4.2  
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)               29   4.2  
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            28   5.5  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   27   9.7  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      27   9.7  
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)                     27   9.7  
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
          Length = 304

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +1

Query: 133 IDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           + +  +PP SEV E   KIVTEYK D++ K  KI+ TY++E
Sbjct: 71  LSESQIPPSSEVREGENKIVTEYKRDDEGKLQKIITTYRVE 111


>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
          Length = 297

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 267 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDG 431
           +KS  + K+ S  GDS S  P P+ +   + ++V  Q ++  ++     D E  G
Sbjct: 79  AKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSEETG 133


>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +3

Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS----KEESQRPDDGELDG 431
           +  S   +KT ++  D  +DK  P+P+    + D  +  I      KE++++  D +L  
Sbjct: 236 IGASPVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLNMKEKTEKSVDAQLAD 295

Query: 432 LKPPSSNVIFKCRTCQE 482
           L    +N+IFK     E
Sbjct: 296 L---VNNLIFKAEKPDE 309


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 324 CRWLNLQICSKFYVWQYSLKQHVFN 250
           C WLN+ + S   VW+  +  H FN
Sbjct: 76  CVWLNIDVISFKNVWKVLMNLHTFN 100


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 309 DSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDG 431
           ++  +KP  NP    V E+ F++   ++   +  D  ELDG
Sbjct: 263 ETHDEKPEENPEVPEVNEEDFIRAADARRRGEDGDTEELDG 303


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 465  CRTCQETI*HCIVHSAHSNXXXXXXXXXXSCRAKLLLQQV 584
            CR CQE I  C  H+ H              +AKL  QQ+
Sbjct: 1549 CRICQELIHLCCYHAKHCMERECVVPFCRHIKAKLRQQQL 1588


>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
          Length = 1077

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 273  SIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
            S A RKT S     A+ K G   A T+        +   KE  +  D+G++DG K
Sbjct: 859  SKASRKTVSNVAFKAAAKAGAVAAVTSAIVGGAFFYKDMKELKKARDEGKMDGKK 913


>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 175 FQPLQKVVEVHLGQSRPHQPRKPEIL 98
           F  L+KV++ HL  S    PR P ++
Sbjct: 267 FSALRKVIKQHLADSSVRSPRSPHVI 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,341
Number of Sequences: 59808
Number of extensions: 337141
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)