Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1077
(637 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U96074-1|AAC78728.1| 320|Homo sapiens translation initiation fa... 71 3e-12
CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein. 71 3e-12
BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation ... 71 3e-12
BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation ... 71 3e-12
BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation ... 71 3e-12
AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation ... 71 3e-12
AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation ... 71 3e-12
AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation ... 71 3e-12
>U96074-1|AAC78728.1| 320|Homo sapiens translation initiation
factor eIF3 p44 subunit protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>CR457134-1|CAG33415.1| 320|Homo sapiens EIF3S4 protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BT006889-1|AAP35535.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BC008469-1|AAH08469.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>BC000733-1|AAH00733.1| 320|Homo sapiens eukaryotic translation
initiation factor 3, subunit 4 delta, 44kDa protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>AF094850-1|AAG15419.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>AF092453-1|AAG15396.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit p42/p44 protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
>AF020833-1|AAB71866.1| 320|Homo sapiens eukaryotic translation
initiation factor 3 subunit protein.
Length = 320
Score = 70.9 bits (166), Expect = 3e-12
Identities = 35/74 (47%), Positives = 45/74 (60%)
Frame = +3
Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
R SK++A+RK W KFG+S D PGPN ATT V++DV M FITSKE+ + E D +
Sbjct: 90 RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147
Query: 438 PPSSNVIFKCRTCQ 479
I CR C+
Sbjct: 148 KLKGQKIVSCRICK 161
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
LPPP EV+ +K VTEYK D D KK KIVRT++IE
Sbjct: 53 LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,087,545
Number of Sequences: 237096
Number of extensions: 1600207
Number of successful extensions: 3525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3525
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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