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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1077
         (637 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U96074-1|AAC78728.1|  320|Homo sapiens translation initiation fa...    71   3e-12
CR457134-1|CAG33415.1|  320|Homo sapiens EIF3S4 protein.               71   3e-12
BT006889-1|AAP35535.1|  320|Homo sapiens eukaryotic translation ...    71   3e-12
BC008469-1|AAH08469.1|  320|Homo sapiens eukaryotic translation ...    71   3e-12
BC000733-1|AAH00733.1|  320|Homo sapiens eukaryotic translation ...    71   3e-12
AF094850-1|AAG15419.1|  320|Homo sapiens eukaryotic translation ...    71   3e-12
AF092453-1|AAG15396.1|  320|Homo sapiens eukaryotic translation ...    71   3e-12
AF020833-1|AAB71866.1|  320|Homo sapiens eukaryotic translation ...    71   3e-12

>U96074-1|AAC78728.1|  320|Homo sapiens translation initiation
           factor eIF3 p44 subunit protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>CR457134-1|CAG33415.1|  320|Homo sapiens EIF3S4 protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>BT006889-1|AAP35535.1|  320|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 4 delta, 44kDa protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>BC008469-1|AAH08469.1|  320|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 4 delta, 44kDa protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>BC000733-1|AAH00733.1|  320|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 4 delta, 44kDa protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>AF094850-1|AAG15419.1|  320|Homo sapiens eukaryotic translation
           initiation factor 3 subunit p42/p44 protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>AF092453-1|AAG15396.1|  320|Homo sapiens eukaryotic translation
           initiation factor 3 subunit p42/p44 protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


>AF020833-1|AAB71866.1|  320|Homo sapiens eukaryotic translation
           initiation factor 3 subunit protein.
          Length = 320

 Score = 70.9 bits (166), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 45/74 (60%)
 Frame = +3

Query: 258 RVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLK 437
           R  SK++A+RK W KFG+S  D PGPN ATT V++DV M FITSKE+    +  E D + 
Sbjct: 90  RKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQE--EEDPMN 147

Query: 438 PPSSNVIFKCRTCQ 479
                 I  CR C+
Sbjct: 148 KLKGQKIVSCRICK 161



 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)
 Frame = +1

Query: 148 LPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIE 255
           LPPP EV+   +K VTEYK D D KK KIVRT++IE
Sbjct: 53  LPPPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIE 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,087,545
Number of Sequences: 237096
Number of extensions: 1600207
Number of successful extensions: 3525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3525
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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