Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1077
         (637 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118933-1|AAM50793.1|  269|Drosophila melanogaster LD24347p pro...    84   1e-16
AE014298-421|AAF45796.1|  269|Drosophila melanogaster CG8636-PA ...    84   1e-16
AE014297-2789|AAF55764.1|  273|Drosophila melanogaster CG10881-P...    75   6e-14
AY060809-1|AAL28357.1| 1272|Drosophila melanogaster GH27809p pro...    29   7.0  
AE013599-3941|AAF47260.2| 1272|Drosophila melanogaster CG30421-P...    29   7.0  

>AY118933-1|AAM50793.1|  269|Drosophila melanogaster LD24347p
           protein.
          Length = 269

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 37/56 (66%), Positives = 44/56 (78%)
 Frame = +1

Query: 85  MPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 252
           MP  E  ++SWADEVE+D G LPP +E VENG K VTEYKY+ D+KK K+VRTYKI
Sbjct: 1   MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKVVRTYKI 56



 Score = 81.8 bits (193), Expect = 7e-16
 Identities = 40/74 (54%), Positives = 55/74 (74%)
 Frame = +3

Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
           K+VV K++AKR+TW+KFGDS +DKPGPN  TT V+E++ MQF+ SKE+ ++ +D  LD  
Sbjct: 58  KQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFLNSKED-EKANDPLLD-- 114

Query: 435 KPPSSNVIFKCRTC 476
             P+ N I KCR C
Sbjct: 115 --PTKN-IAKCRIC 125


>AE014298-421|AAF45796.1|  269|Drosophila melanogaster CG8636-PA
           protein.
          Length = 269

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 37/56 (66%), Positives = 44/56 (78%)
 Frame = +1

Query: 85  MPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 252
           MP  E  ++SWADEVE+D G LPP +E VENG K VTEYKY+ D+KK K+VRTYKI
Sbjct: 1   MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKVVRTYKI 56



 Score = 81.8 bits (193), Expect = 7e-16
 Identities = 40/74 (54%), Positives = 55/74 (74%)
 Frame = +3

Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
           K+VV K++AKR+TW+KFGDS +DKPGPN  TT V+E++ MQF+ SKE+ ++ +D  LD  
Sbjct: 58  KQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFLNSKED-EKANDPLLD-- 114

Query: 435 KPPSSNVIFKCRTC 476
             P+ N I KCR C
Sbjct: 115 --PTKN-IAKCRIC 125


>AE014297-2789|AAF55764.1|  273|Drosophila melanogaster CG10881-PA
           protein.
          Length = 273

 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 38/74 (51%), Positives = 50/74 (67%)
 Frame = +3

Query: 255 KRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGL 434
           K++V K++A+R+ W KFGDS SDKPGPN  TT  +E++FMQFI SK+  Q   + +LD  
Sbjct: 56  KQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQFIGSKDFDQ-THETQLD-- 112

Query: 435 KPPSSNVIFKCRTC 476
             P  N I KCR C
Sbjct: 113 --PGKN-IAKCRIC 123



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
 Frame = +1

Query: 103 FQASWADEVEIDQ-GVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIENVLFQRVL 279
           F  SWADEV+ D    LPP +E ++   K VTEYK+++D KKVK+VRT+KIE  +  + +
Sbjct: 4   FVTSWADEVDADYVDGLPPSNEYIKGDFKYVTEYKFNDDGKKVKVVRTFKIEKQIVPKAV 63


>AY060809-1|AAL28357.1| 1272|Drosophila melanogaster GH27809p
           protein.
          Length = 1272

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 220 CYHCRIYIP*QFLVHFQPLQKVVEVHLGQSRPHQPRKPE 104
           C HC+ Y+P    +    L  ++ VH  + R HQ + P+
Sbjct: 745 CPHCQQYLPVVKTLGLWSLPDILVVHFKRFRQHQSKGPQ 783


>AE013599-3941|AAF47260.2| 1272|Drosophila melanogaster CG30421-PA
           protein.
          Length = 1272

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 220 CYHCRIYIP*QFLVHFQPLQKVVEVHLGQSRPHQPRKPE 104
           C HC+ Y+P    +    L  ++ VH  + R HQ + P+
Sbjct: 745 CPHCQQYLPVVKTLGLWSLPDILVVHFKRFRQHQSKGPQ 783


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,483,844
Number of Sequences: 53049
Number of extensions: 499631
Number of successful extensions: 1861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)