Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1077
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine re...    27   8.5  

>Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical
           protein F22B5.2 protein.
          Length = 256

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/47 (46%), Positives = 27/47 (57%)
 Frame = +3

Query: 264 VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQ 404
           V K +A RK W KFG    +  GP  ATT VAE+V MQF  ++   Q
Sbjct: 56  VPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQ 102


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +3

Query: 282 KRKTWSKFGDSASDKP----GPNPATTNVAE 362
           KRKT  KFGD A D P      NP TT+  E
Sbjct: 21  KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 163 EVVENGLKIVTEYKYDNDNKKVKIV 237
           + V+   K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 163 EVVENGLKIVTEYKYDNDNKKVKIV 237
           + V+   K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431


>U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK813.4a protein.
          Length = 171

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 467 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 321
           T+K NI   W++ ++  +   L L   GD  ++++DI   I+  R RP++V
Sbjct: 108 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 156


>U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical
           protein ZK813.4b protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 467 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 321
           T+K NI   W++ ++  +   L L   GD  ++++DI   I+  R RP++V
Sbjct: 89  TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 137


>AF016420-7|AAB65303.1|  428|Caenorhabditis elegans Serpentine
           receptor, class r protein8 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 157 PSEVVENGLKIVTEYKYDND----NKKVKIVRTYKIENVLFQRVLPNVKLGANLEIQPAT 324
           P+ +++  LK  T    +ND    +K   + +TY+I    FQ+V  N+ + A+L I   T
Sbjct: 340 PAIILQEHLKTTTRILINNDEFECSKDPIVYQTYRIMIDRFQKVNTNISIIASLPITVQT 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,890
Number of Sequences: 27780
Number of extensions: 252828
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)