Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1076
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   102   4e-23
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   0.75 
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   0.75 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.00 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.3  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    27   1.7  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.3  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   7.0  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   9.3  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  102 bits (245), Expect = 4e-23
 Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
 Frame = +2

Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
           V++KGKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +
Sbjct: 77  VVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISV 136

Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610
           LP+ D+VEGLTG+LF+VYLKPYF+    R I +  L   RG  R+   +     P  F I
Sbjct: 137 LPLADTVEGLTGSLFDVYLKPYFVE-AYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGI 195

Query: 611 VAPDTVIH 634
           V+ DT+IH
Sbjct: 196 VSQDTIIH 203



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 31/55 (56%), Positives = 40/55 (72%)
 Frame = +3

Query: 90  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGD
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGD 75


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 458 QLNHQLAVCGLV---FHISLKDTERWI 387
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 458 QLNHQLAVCGLV---FHISLKDTERWI 387
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 115 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 228
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 428 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 318
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 64  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 237
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 238 NSSVVTSLAQGQTPQGN 288
            S  +          GN
Sbjct: 343 RSPPINFDGTSYDAAGN 359


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 225 MEQLQLFRGDQSCSRANAARKPFASCSQTIIALMRK 332
           + Q QLF+  +  S  N  R+ F    QTI+ +MRK
Sbjct: 80  LTQNQLFKNVEDYSFYNLNREKFQRDKQTIVGVMRK 115



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 166 SLSKKQSAMTTQSWHFHRPKWSNFNSSVVTSLAQGQTP 279
           ++ +  SA+   +   H P W     +++ SLAQG  P
Sbjct: 511 AVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNP 548


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 114 PD-DLSTAILRRKDRPNRLIVEEAVSD 191
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 87  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 245
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 497 PYFMRLTVRSIVRHLHGPR 553
           P ++ L VR IVRHLH PR
Sbjct: 357 PIYLEL-VRIIVRHLHYPR 374


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 112 ALMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHF-HRPKWSNFNSSVVTSLAQGQ 273
           A  +Y P+ S+    P  +  +K+      +W F H    + +N+ +   L Q Q
Sbjct: 245 ASAVYHPQPSLEAQLPAAARKRKKEPPKDATWLFQHAKATAAYNNDITKYLVQKQ 299


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +2

Query: 377 SDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRG 556
           S V  + P  S  Y + V       +V    G +FE+Y     + L  R + +  H P  
Sbjct: 151 SIVQILLPKLSGDYQEHVQFFASISAVVAPRGYVFEIYHAVEHLSLEAREVFQLHHPPSP 210

Query: 557 HARRRVQS 580
              RRV S
Sbjct: 211 KQTRRVVS 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,920
Number of Sequences: 5004
Number of extensions: 54594
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)