BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1076 (642 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 102 4e-23 SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 0.75 SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 0.75 SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.00 SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.3 SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 27 1.7 SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 1.7 SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 5.3 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.3 SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 7.0 SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 9.3 SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.3 >SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosaccharomyces pombe|chr 1|||Manual Length = 815 Score = 102 bits (245), Expect = 4e-23 Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 2/128 (1%) Frame = +2 Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436 V++KGKRRK+TV IVL+D+ D R+ D+V+I PCP +KY +R+ + Sbjct: 77 VVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISV 136 Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610 LP+ D+VEGLTG+LF+VYLKPYF+ R I + L RG R+ + P F I Sbjct: 137 LPLADTVEGLTGSLFDVYLKPYFVE-AYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGI 195 Query: 611 VAPDTVIH 634 V+ DT+IH Sbjct: 196 VSQDTIIH 203 Score = 67.3 bits (157), Expect = 2e-12 Identities = 31/55 (56%), Positives = 40/55 (72%) Frame = +3 Query: 90 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254 N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGD Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGD 75 >SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 28.7 bits (61), Expect = 0.75 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%) Frame = -2 Query: 458 QLNHQLAVCGLV---FHISLKDTERWI 387 QLN ++ CG++ F++ LKD E+W+ Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90 >SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 28.7 bits (61), Expect = 0.75 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%) Frame = -2 Query: 458 QLNHQLAVCGLV---FHISLKDTERWI 387 QLN ++ CG++ F++ LKD E+W+ Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90 >SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schizosaccharomyces pombe|chr 1|||Manual Length = 319 Score = 28.3 bits (60), Expect = 1.00 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +1 Query: 115 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 228 L + R + DP ++ + Q + T+SWH FH +W Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297 >SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 27.9 bits (59), Expect = 1.3 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -2 Query: 428 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 318 LV + LKD WI + + E F G ++FS+QG Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472 >SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 382 Score = 27.5 bits (58), Expect = 1.7 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +1 Query: 64 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 237 F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342 Query: 238 NSSVVTSLAQGQTPQGN 288 S + GN Sbjct: 343 RSPPINFDGTSYDAAGN 359 >SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 661 Score = 27.5 bits (58), Expect = 1.7 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +3 Query: 225 MEQLQLFRGDQSCSRANAARKPFASCSQTIIALMRK 332 + Q QLF+ + S N R+ F QTI+ +MRK Sbjct: 80 LTQNQLFKNVEDYSFYNLNREKFQRDKQTIVGVMRK 115 Score = 26.6 bits (56), Expect = 3.0 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +1 Query: 166 SLSKKQSAMTTQSWHFHRPKWSNFNSSVVTSLAQGQTP 279 ++ + SA+ + H P W +++ SLAQG P Sbjct: 511 AVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNP 548 >SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 409 Score = 25.8 bits (54), Expect = 5.3 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +3 Query: 114 PD-DLSTAILRRKDRPNRLIVEEAVSD 191 PD D + + + RK+ PNRL++ A+S+ Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 25.8 bits (54), Expect = 5.3 Identities = 14/53 (26%), Positives = 30/53 (56%) Frame = +3 Query: 87 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 245 L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+ Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819 >SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr 2|||Manual Length = 955 Score = 25.4 bits (53), Expect = 7.0 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +2 Query: 497 PYFMRLTVRSIVRHLHGPR 553 P ++ L VR IVRHLH PR Sbjct: 357 PIYLEL-VRIIVRHLHYPR 374 >SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces pombe|chr 3|||Manual Length = 390 Score = 25.0 bits (52), Expect = 9.3 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +1 Query: 112 ALMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHF-HRPKWSNFNSSVVTSLAQGQ 273 A +Y P+ S+ P + +K+ +W F H + +N+ + L Q Q Sbjct: 245 ASAVYHPQPSLEAQLPAAARKRKKEPPKDATWLFQHAKATAAYNNDITKYLVQKQ 299 >SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 419 Score = 25.0 bits (52), Expect = 9.3 Identities = 19/68 (27%), Positives = 27/68 (39%) Frame = +2 Query: 377 SDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRG 556 S V + P S Y + V +V G +FE+Y + L R + + H P Sbjct: 151 SIVQILLPKLSGDYQEHVQFFASISAVVAPRGYVFEIYHAVEHLSLEAREVFQLHHPPSP 210 Query: 557 HARRRVQS 580 RRV S Sbjct: 211 KQTRRVVS 218 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,747,920 Number of Sequences: 5004 Number of extensions: 54594 Number of successful extensions: 167 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 166 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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