Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1076
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 135 2e-32
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 130 7e-31
08_02_0657 - 19749835-19751942,19753123-19753561 100 1e-21
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 28 5.5
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 28 7.2
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 135 bits (327), Expect = 2e-32
Identities = 68/129 (52%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHI
Sbjct: 64 VLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHI 123
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARR-RVQSGRNRPSPFCIV 613
LPIDD+VEG+TGNLF+ +LKPYF+ L RG R + P+ +CIV
Sbjct: 124 LPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIV 183
Query: 614 APDTVIHCD 640
APDT I CD
Sbjct: 184 APDTEIFCD 192
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/52 (59%), Positives = 38/52 (73%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGD
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGD 62
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 130 bits (315), Expect = 7e-31
Identities = 66/129 (51%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHI
Sbjct: 64 VLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHI 123
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARR-RVQSGRNRPSPFCIV 613
LPIDD+VEG+TGNLF+ +LKPYF+ L RG R + P+ +CIV
Sbjct: 124 LPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIV 183
Query: 614 APDTVIHCD 640
APDT I CD
Sbjct: 184 APDTEIFCD 192
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/52 (67%), Positives = 39/52 (75%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGD
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGD 62
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 100 bits (239), Expect = 1e-21
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
V L+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV +
Sbjct: 67 VTLRGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQL 126
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRL--TVRSIVRHLHGPRGHA-RRRVQSGRNRPSPFC 607
P DDSVEG++G+LFE YLKPYFM V+ R L HA +V P
Sbjct: 127 RPFDDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNEP-V 185
Query: 608 IVAPDTVIHCD 640
IVA DT I CD
Sbjct: 186 IVAGDTEIFCD 196
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Frame = +3
Query: 120 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDQSCSRANAAR 284
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD R R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 285 K 287
+
Sbjct: 76 E 76
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 90 NKMADNKSPDDLSTAILR-RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDQSCS 266
N A + DD S A ++D P ++ VE+ V D + + KM+ L L++ + +
Sbjct: 591 NHAAPQANKDDGSGANSAVQEDAPKKVEVEKQVLDSREKLEYYRTKMQDLVLYK-SRCDN 649
Query: 267 RANAARKPFASCSQTIIALMRKF 335
R N + +S + + +L +K+
Sbjct: 650 RLNEITERASSDKREVESLAKKY 672
>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 532 TTPSWSAGACAPSSSKWSKQTITIL 606
++P W +CAP WS++ I+
Sbjct: 1324 SSPPWMLASCAPGDDAWSRRATVIV 1348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,500
Number of Sequences: 37544
Number of extensions: 369611
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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