BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1076 (642 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45627| Best HMM Match : AAA (HMM E-Value=0) 79 2e-15 SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8 SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8 >SB_45627| Best HMM Match : AAA (HMM E-Value=0) Length = 628 Score = 79.4 bits (187), Expect = 2e-15 Identities = 36/46 (78%), Positives = 43/46 (93%) Frame = +3 Query: 117 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254 D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGD Sbjct: 5 DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGD 50 Score = 49.6 bits (113), Expect = 2e-06 Identities = 24/44 (54%), Positives = 28/44 (63%) Frame = +2 Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 388 VL+KGK+RK+TVCIVLSDD D+KIRM DVV Sbjct: 52 VLIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95 Score = 40.7 bits (91), Expect = 0.001 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +3 Query: 534 DTFMVRGGMRAVEFKVVETD 593 D F+VRGGMRAVEFKV+ETD Sbjct: 104 DMFLVRGGMRAVEFKVIETD 123 Score = 39.1 bits (87), Expect = 0.003 Identities = 14/16 (87%), Positives = 16/16 (100%) Frame = +2 Query: 593 PSPFCIVAPDTVIHCD 640 PSP+CIVAPDTVIHC+ Sbjct: 124 PSPYCIVAPDTVIHCE 139 >SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2362 Score = 27.5 bits (58), Expect = 9.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -2 Query: 578 FELDGAHAPADHEGVVRW 525 F+ DGAHAP D + + W Sbjct: 1328 FKFDGAHAPGDEDAMPPW 1345 >SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 255 Score = 27.5 bits (58), Expect = 9.8 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +1 Query: 106 IKALMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTSLAQGQT 276 + A +IYR +++ T SLSK ++ + ++W + + +++ T LA G T Sbjct: 95 VTAQLIYRRNGCYSQSTKTWSLSKTETITSFENWKQNLMYTLSLDTNFSTYLAVGAT 151 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,991,398 Number of Sequences: 59808 Number of extensions: 433807 Number of successful extensions: 1300 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1300 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1620947750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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