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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1076
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         79   2e-15
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 36/46 (78%), Positives = 43/46 (93%)
 Frame = +3

Query: 117 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGD
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGD 50



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 28/44 (63%)
 Frame = +2

Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 388
           VL+KGK+RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 52  VLIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 534 DTFMVRGGMRAVEFKVVETD 593
           D F+VRGGMRAVEFKV+ETD
Sbjct: 104 DMFLVRGGMRAVEFKVIETD 123



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +2

Query: 593 PSPFCIVAPDTVIHCD 640
           PSP+CIVAPDTVIHC+
Sbjct: 124 PSPYCIVAPDTVIHCE 139


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 578  FELDGAHAPADHEGVVRW 525
            F+ DGAHAP D + +  W
Sbjct: 1328 FKFDGAHAPGDEDAMPPW 1345


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 106 IKALMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTSLAQGQT 276
           + A +IYR     +++  T SLSK ++  + ++W  +     + +++  T LA G T
Sbjct: 95  VTAQLIYRRNGCYSQSTKTWSLSKTETITSFENWKQNLMYTLSLDTNFSTYLAVGAT 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,991,398
Number of Sequences: 59808
Number of extensions: 433807
Number of successful extensions: 1300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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