Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1076
         (642 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    26   0.88 
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    26   1.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   2.0  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    25   2.7  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   6.2  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.2  
AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative odorant-b...    23   8.2  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   8.2  

>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 497 PYFMRLTVRSIVRHLHGPRGHARRRVQSGRNRPSPF 604
           P  +R+ V      +H PRG    R  S  + P PF
Sbjct: 819 PQKLRIVVSKSANAMHPPRGSRHTRQGSEASSPPPF 854


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 533 RHLHGPRGHARRRVQSGRNRPSPFC 607
           RHL+   GH    +  G NR  P C
Sbjct: 355 RHLYNLTGHGGHCIDCGANRDGPNC 379


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 121 IYRPRSSVARTDPTVSLSKKQSAMTTQSW 207
           +Y+  S+V RTD   ++ K++   T + W
Sbjct: 849 VYQRLSAVNRTDTRANIRKQERQATIEQW 877


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 461 PQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSS 336
           P L    ++  L+ H  L+     IP+  D H+G  S H SS
Sbjct: 673 PSLKEDNSLLSLIGHFFLQTP---IPNNGDVHQGGDSNHTSS 711


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 407 KDTERWIPHQKDAHEG 360
           K+T RW+  ++D  EG
Sbjct: 124 KETARWVKFEEDVEEG 139


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 109  KALMIYRPRSSVARTDPTVSLS 174
            + L + +PRSS  R+DP   +S
Sbjct: 998  ETLRLAQPRSSAGRSDPMFRMS 1019


>AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative
           odorant-binding protein OBPjj17 protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 201 VVALSQAKMEQLQLFRGDQSCSRANAARKPFASCSQ 308
           V A++ A     +L RG ++C R +    P   CS+
Sbjct: 26  VCAVTVASANSEELLRGKENCLRHDDFPSPNECCSK 61


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 541 SWSAGACAPSSSK---WSKQTITILH 609
           +W A A AP++S+   W+ + I  LH
Sbjct: 886 AWDAAAAAPTASRYAVWAHRMIPDLH 911


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,798
Number of Sequences: 2352
Number of extensions: 13832
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)