Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1076
(642 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 156 7e-38
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 155 1e-37
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 155 1e-37
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 155 1e-37
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 155 1e-37
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 141 2e-33
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 39 0.013
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 156 bits (378), Expect = 7e-38
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+
Sbjct: 57 VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610
LPIDD+VEG+TGNLFEVYLKPYF+ R I + + RG R + PSP+CI
Sbjct: 117 LPIDDTVEGITGNLFEVYLKPYFLE-AYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCI 175
Query: 611 VAPDTVIHCD 640
VAPDTVIHC+
Sbjct: 176 VAPDTVIHCE 185
Score = 80.6 bits (190), Expect = 4e-15
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGD
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGD 55
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 155 bits (376), Expect = 1e-37
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+
Sbjct: 57 VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610
LPIDD+VEG+TGNLFEVYLKPYF+ R I + + RG R + PSP+CI
Sbjct: 117 LPIDDTVEGITGNLFEVYLKPYFLE-AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCI 175
Query: 611 VAPDTVIHCD 640
VAPDTVIHC+
Sbjct: 176 VAPDTVIHCE 185
Score = 80.6 bits (190), Expect = 4e-15
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGD
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGD 55
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 155 bits (376), Expect = 1e-37
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+
Sbjct: 57 VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610
LPIDD+VEG+TGNLFEVYLKPYF+ R I + + RG R + PSP+CI
Sbjct: 117 LPIDDTVEGITGNLFEVYLKPYFLE-AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCI 175
Query: 611 VAPDTVIHCD 640
VAPDTVIHC+
Sbjct: 176 VAPDTVIHCE 185
Score = 80.6 bits (190), Expect = 4e-15
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGD
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGD 55
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 155 bits (376), Expect = 1e-37
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+
Sbjct: 57 VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610
LPIDD+VEG+TGNLFEVYLKPYF+ R I + + RG R + PSP+CI
Sbjct: 117 LPIDDTVEGITGNLFEVYLKPYFLE-AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCI 175
Query: 611 VAPDTVIHCD 640
VAPDTVIHC+
Sbjct: 176 VAPDTVIHCE 185
Score = 80.6 bits (190), Expect = 4e-15
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGD
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGD 55
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 155 bits (376), Expect = 1e-37
Identities = 77/130 (59%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
VLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+
Sbjct: 57 VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 116
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCI 610
LPIDD+VEG+TGNLFEVYLKPYF+ R I + + RG R + PSP+CI
Sbjct: 117 LPIDDTVEGITGNLFEVYLKPYFLE-AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCI 175
Query: 611 VAPDTVIHCD 640
VAPDTVIHC+
Sbjct: 176 VAPDTVIHCE 185
Score = 80.6 bits (190), Expect = 4e-15
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGD
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGD 55
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 141 bits (341), Expect = 2e-33
Identities = 70/122 (57%), Positives = 82/122 (67%), Gaps = 2/122 (1%)
Frame = +2
Query: 281 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 460
+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62
Query: 461 GLTGNLFEVYLKPYFMRLTVRSIVR-HLHGPRGHARR-RVQSGRNRPSPFCIVAPDTVIH 634
G+TGNLFEVYLKPYF+ R I + + RG R + PSP+CIVAPDTVIH
Sbjct: 63 GITGNLFEVYLKPYFLE-AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 121
Query: 635 CD 640
C+
Sbjct: 122 CE 123
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 39.1 bits (87), Expect = 0.013
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +2
Query: 593 PSPFCIVAPDTVIHCD 640
PSP+CIVAPDTVIHC+
Sbjct: 8 PSPYCIVAPDTVIHCE 23
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,699,830
Number of Sequences: 237096
Number of extensions: 1953381
Number of successful extensions: 4004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3992
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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