Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1076
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 128 3e-30
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 119 2e-27
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 3.7
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 28 6.5
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 28 6.5
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 128 bits (310), Expect = 3e-30
Identities = 62/128 (48%), Positives = 86/128 (67%), Gaps = 2/128 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
V+LKGK+RKE+V I++SD++CP+EK+RM DVVSI P P++ YG R+H+
Sbjct: 63 VILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHV 122
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARRRVQSG--RNRPSPFCI 610
LPIDD++EGLTGNLF+V+LKPYF+ R + + A R V+ P+P CI
Sbjct: 123 LPIDDTIEGLTGNLFDVFLKPYFLE-AYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACI 181
Query: 611 VAPDTVIH 634
V+PDT+IH
Sbjct: 182 VSPDTMIH 189
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/49 (65%), Positives = 42/49 (85%)
Frame = +3
Query: 108 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGD 61
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 119 bits (286), Expect = 2e-27
Identities = 64/128 (50%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
V+LKGK+R+ETV IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+
Sbjct: 63 VILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHV 121
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARRRVQSG--RNRPSPFCI 610
LPIDD++EGLTGNLF+V+L+PYF R + + A R V+ P+P CI
Sbjct: 122 LPIDDTIEGLTGNLFDVFLRPYFTD-AYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACI 180
Query: 611 VAPDTVIH 634
VAPDTVIH
Sbjct: 181 VAPDTVIH 188
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/60 (53%), Positives = 45/60 (75%)
Frame = +3
Query: 108 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDQSCSRANAARK 287
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD + R+
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 119 bits (286), Expect = 2e-27
Identities = 64/128 (50%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
V+LKGK+R+ETV IVL+ DNCP++KI+M DVVSI+ ++YGKRVH+
Sbjct: 63 VILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHV 121
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARRRVQSG--RNRPSPFCI 610
LPIDD++EGLTGNLF+V+L+PYF R + + A R V+ P+P CI
Sbjct: 122 LPIDDTIEGLTGNLFDVFLRPYFTD-AYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACI 180
Query: 611 VAPDTVIH 634
VAPDTVIH
Sbjct: 181 VAPDTVIH 188
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/60 (53%), Positives = 45/60 (75%)
Frame = +3
Query: 108 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDQSCSRANAARK 287
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD + R+
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 122 IIRAFIICHFIQNLLLESKNYYNFY 48
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 464 LTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARRRVQ 577
++G+ FE + Y + + R +H PR + R RVQ
Sbjct: 862 VSGSRFEPFFDDYMLNTCKGLMTRPVHDPRAYKRYRVQ 899
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 464 LTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARRRVQ 577
++G+ FE + Y + + R +H PR + R RVQ
Sbjct: 862 VSGSRFEPFFDDYMLNTCKGLMTRPVHDPRAYKRYRVQ 899
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 464 LTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARRRVQ 577
++G+ FE + Y + + R +H PR + R RVQ
Sbjct: 862 VSGSRFEPFFDDYMLNTCKGLMTRPVHDPRAYKRYRVQ 899
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 87 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 236
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 87 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 236
L K+ NK+ +DL T LR++ +++ E V+ N AK+E +
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,136
Number of Sequences: 27780
Number of extensions: 312736
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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