Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1076
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 130 1e-30
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 130 1e-30
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 124 4e-29
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.86
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 1.1
At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM... 28 4.6
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 28 6.1
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 8.0
At2g23360.1 68415.m02790 transport protein-related contains Pfam... 27 8.0
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 8.0
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 130 bits (313), Expect = 1e-30
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
+L+KGK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHI
Sbjct: 61 ILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHI 120
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARR-RVQSGRNRPSPFCIV 613
LP+DD+VEG+TGNLF+ YLKPYF+ L RG R + P+ +C+V
Sbjct: 121 LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV 180
Query: 614 APDTVIHCD 640
APDT I C+
Sbjct: 181 APDTEIFCE 189
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGD
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGD 59
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 130 bits (313), Expect = 1e-30
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
+L+KGK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHI
Sbjct: 61 ILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHI 120
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARR-RVQSGRNRPSPFCIV 613
LP+DD+VEG+TGNLF+ YLKPYF+ L RG R + P+ +C+V
Sbjct: 121 LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV 180
Query: 614 APDTVIHCD 640
APDT I C+
Sbjct: 181 APDTEIFCE 189
Score = 75.4 bits (177), Expect = 3e-14
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +3
Query: 99 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGD
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGD 59
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 124 bits (300), Expect = 4e-29
Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Frame = +2
Query: 257 VLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHI 436
+L+KGK+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYG RVHI
Sbjct: 62 ILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHI 121
Query: 437 LPIDDSVEGLTGNLFEVYLKPYFMRLTVRSIVRHLHGPRGHARR-RVQSGRNRPSPFCIV 613
LP+DD++EG++GN+F+ YLKPYF+ L RG R + P+ +C+V
Sbjct: 122 LPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVV 181
Query: 614 APDTVIHCD 640
APDT I C+
Sbjct: 182 APDTEIFCE 190
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +3
Query: 99 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 254
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGD
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD 60
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 251 TTEELKLLHFGL*KCHD*VVIAD 183
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 406 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 311
RT S+ +++ HTK++ HN + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM
domain-containing protein contains Pfam profiles
PF00258: Flavodoxin, PF04055: radical SAM domain protein
Length = 647
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 605 KMVMVCFDHFELDGAHAPADHEGVVRWIGR*AS*STASSILRIDCQ 468
K +V F DG P + E +V W+G A S+L DC+
Sbjct: 94 KETLVLFIASTWDGGKPPKNGEFLVNWLGESAEDFRVGSLLLSDCK 139
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -2
Query: 455 LNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCK---RF 285
L++ CG H S D + I + H F+QH + + G R R+ C+ +
Sbjct: 262 LSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCR-RSVCQFNGAY 320
Query: 284 PCGVCP 267
C VCP
Sbjct: 321 SCLVCP 326
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 237
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At2g23360.1 68415.m02790 transport protein-related contains Pfam
PF05911: Plant protein of unknown function (DUF869)
profile; weak similarity to Intracellular protein
transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 886
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 159 NRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDQSCSRANAARKPFASCSQTIIAL 323
+R VEE +D + + ++ K+E+ Q R + + AA + A C +TI+ L
Sbjct: 687 SRKTVEEEANDKTASASENELKLEEKQNMRTELEIA---AASEKLAECQETILNL 738
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 73 SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 204
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,422
Number of Sequences: 28952
Number of extensions: 292427
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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