Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.9  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   5.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.8  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 168 IFIVIPHTLINKLWFHFGSDS 106
           IFI+IP TL +  +F  G +S
Sbjct: 501 IFIIIPVTLTSVCYFMIGLNS 521


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 472 WSPETTPCTTFRCDSIDVTFVISS 401
           WS +TT   T + D+ID+  V+ +
Sbjct: 18  WSEDTTHKYTTKYDNIDLENVVKN 41


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 69  VFCRTRGTCFQWIYAFS 19
           VFCR R   + + YAFS
Sbjct: 112 VFCRDRVNPYLFYYAFS 128


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 472 WSPETTPCTTFRCDS 428
           W+    PCTT  C++
Sbjct: 686 WTSSDNPCTTCFCEN 700


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,896
Number of Sequences: 336
Number of extensions: 3272
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)