BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1075 (661 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 2.4 SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 3.2 SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 4.2 SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.3 SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 25 7.3 SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 7.3 SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 9.7 SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 9.7 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.7 >SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 319 Score = 27.1 bits (57), Expect = 2.4 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +3 Query: 351 DDAYSCKICQFRCEKGGDEITNVTSILSHLKVVH 452 DDA + C F CE GD I S +SHL +H Sbjct: 4 DDAIIIR-CPFDCEFAGDSI----SFISHLTTIH 32 >SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamily|Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 26.6 bits (56), Expect = 3.2 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -1 Query: 187 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 32 FRH LH HP + H +++P H++LV +++ L + LL D Sbjct: 73 FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123 >SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr 1|||Manual Length = 512 Score = 26.2 bits (55), Expect = 4.2 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = -1 Query: 505 SSRSQSGPVMIWSPETTPCTTFRCDS 428 ++ G +M+W P TP TT D+ Sbjct: 83 ATAGDEGTIMLWVPTNTPITTLADDA 108 >SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 25.4 bits (53), Expect = 7.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 47 VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 154 VPL+ QKT + K+ ++ LPK N+ + +CG Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425 >SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 25.4 bits (53), Expect = 7.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 280 QSAMHKKSKREKRNGYGKCLRSVKTTRI 363 +S M K +K E + Y + LRS TTR+ Sbjct: 117 ESLMAKLAKAEYQGAYMQVLRSKSTTRV 144 >SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 478 Score = 25.4 bits (53), Expect = 7.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 454 PCTTFRCDSIDVTFVISSPPFSH 386 P TFRCD D+ FV S +H Sbjct: 135 PNATFRCDKCDMMFVKQSGLTNH 157 >SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 292 Score = 25.0 bits (52), Expect = 9.7 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -1 Query: 157 HPTYSH*QTLVPFWERQH 104 HP Y + ++ PFWE H Sbjct: 197 HPAYENDRSWRPFWENYH 214 >SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 561 Score = 25.0 bits (52), Expect = 9.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 436 CDSIDVTFVISSPPFSHLNWQILHEYASSSH 344 CDS + + IS HL+WQ++ SSH Sbjct: 433 CDSDALVYEISRANGVHLHWQMIPIPKISSH 463 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.0 bits (52), Expect = 9.7 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%) Frame = +3 Query: 291 AQEIEKGKTKW--IWKVFEEC 347 A+++E+GK KW W F+ C Sbjct: 878 AEKMERGKVKWKVYWTYFKAC 898 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,658,555 Number of Sequences: 5004 Number of extensions: 52032 Number of successful extensions: 184 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 184 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 299817502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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