Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   2.4  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   3.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    25   7.3  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   7.3  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.7  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   9.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.7  

>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 351 DDAYSCKICQFRCEKGGDEITNVTSILSHLKVVH 452
           DDA   + C F CE  GD I    S +SHL  +H
Sbjct: 4   DDAIIIR-CPFDCEFAGDSI----SFISHLTTIH 32


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 187 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 32
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 505 SSRSQSGPVMIWSPETTPCTTFRCDS 428
           ++    G +M+W P  TP TT   D+
Sbjct: 83  ATAGDEGTIMLWVPTNTPITTLADDA 108


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 47  VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 154
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 280 QSAMHKKSKREKRNGYGKCLRSVKTTRI 363
           +S M K +K E +  Y + LRS  TTR+
Sbjct: 117 ESLMAKLAKAEYQGAYMQVLRSKSTTRV 144


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 454 PCTTFRCDSIDVTFVISSPPFSH 386
           P  TFRCD  D+ FV  S   +H
Sbjct: 135 PNATFRCDKCDMMFVKQSGLTNH 157


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 157 HPTYSH*QTLVPFWERQH 104
           HP Y + ++  PFWE  H
Sbjct: 197 HPAYENDRSWRPFWENYH 214


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 436 CDSIDVTFVISSPPFSHLNWQILHEYASSSH 344
           CDS  + + IS     HL+WQ++     SSH
Sbjct: 433 CDSDALVYEISRANGVHLHWQMIPIPKISSH 463


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 291 AQEIEKGKTKW--IWKVFEEC 347
           A+++E+GK KW   W  F+ C
Sbjct: 878 AEKMERGKVKWKVYWTYFKAC 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,555
Number of Sequences: 5004
Number of extensions: 52032
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)