Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0262 + 13563082-13563633                                         30   1.4  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     29   3.3  
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   3.3  
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    29   4.3  
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524...    29   4.3  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   5.7  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   7.6  

>06_02_0262 + 13563082-13563633
          Length = 183

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 WF*WLCNWRCNISGGEGGA-VGDAQEIEKGKTKWIWK 332
           W  W   WRCN+ GG GGA  GD         +  W+
Sbjct: 65  WRRW--RWRCNVGGGRGGAGSGDGVHASAVGVRGAWQ 99


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 258 YYISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFH 121
           Y   SC+ + TS + I +  +V+ +V++  +FI +     NK   H
Sbjct: 467 YAAGSCQDVSTSIYVITLAGAVLIYVVIHIVFITLEDEDKNKTSVH 512


>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 86  QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 184
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 258 YYISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINK 133
           Y   SCR + TS + I +   V+ +V++  IFI +   +  K
Sbjct: 482 YSAGSCRDVTTSIYVIALAGVVLVYVVIHVIFITLDEDMGKK 523


>06_02_0008 -
           10552066-10552116,10552224-10552323,10552394-10552449,
           10553950-10557180
          Length = 1145

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 258 YYISSCRAIKTSHFHIRIVLSVISFVIVR-AIFI-VIPHTL 142
           Y   SCRA+K+S + + +VLSV  +V +   +FI V+P  L
Sbjct: 196 YAAGSCRALKSSVYILVLVLSVFFYVGIHILVFIRVVPKWL 236


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 162 IVIPHTLINKLWFHFGSDSIVLIFVW 85
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 174 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 82
           R   + +P TL+++LW HF     +  +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,725,873
Number of Sequences: 37544
Number of extensions: 400569
Number of successful extensions: 1358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)