Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1075
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 33 0.27
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3) 30 1.5
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_54552| Best HMM Match : Vicilin_N (HMM E-Value=0.87) 29 2.5
SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3) 29 2.5
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 29 2.5
SB_48891| Best HMM Match : PQQ (HMM E-Value=0.73) 29 2.5
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05) 28 5.9
SB_39405| Best HMM Match : Pyridoxal_deC (HMM E-Value=1.8e-06) 28 5.9
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 28 5.9
SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 28 7.7
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 28 7.7
SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13) 28 7.7
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 7.7
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 7.7
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 28 7.7
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 7.7
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 28 7.7
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 28 7.7
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 28 7.7
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 28 7.7
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = -2
Query: 234 IKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLINKLWFHFGS-DSIVLIFVWYRHKFV- 67
+ S F + +++ V+ V+V + + T +N L + + D + L+FV ++ F+
Sbjct: 598 VLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLTLLFVSPQYVFIH 657
Query: 66 -FCRTRGTCFQWIYAFSFR 13
F G CF + +AF+FR
Sbjct: 658 TFVHPIGECFSFFFAFAFR 676
>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -2
Query: 222 HFHIRIVLSVISFVIVRAIFIVIPHTLINKL 130
HF R VL V+ FV V +I IV+P+ L+ +L
Sbjct: 130 HFGPRTVLGVVVFVWVLSIAIVLPYMLVLRL 160
>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
Length = 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 198 SVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTRG--TCFQWIY 28
+++S + I I +T NKL H +D VL ++ K CR +G T FQ +Y
Sbjct: 178 TIVSKCVTSYISEFIGNTSTNKLDVHCTADKAVLSYIVMDRKLNVCRWQGYWTLFQLLY 236
>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 222 DWF*WLCNWRCNISGGEGGAVGDAQEIEKGKTKWIWKVFEECEDD----AYSCKICQFRC 389
DW C CN GG GG GD + + + +W EC+ + + +CK C
Sbjct: 57 DWMKANCAKSCNSCGG-GGGRGDCTDSQ--QMCLVWAKNGECQKNKDWMSANCKKSCNTC 113
Query: 390 EKGGDEIT 413
GG E T
Sbjct: 114 TNGGSETT 121
>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 433 DSIDVTFVISSPPFSHLNWQILHEYA 356
++ DVTFVI PP+ H W+ EYA
Sbjct: 60 ETYDVTFVIPPPPYGHCLWE---EYA 82
>SB_54552| Best HMM Match : Vicilin_N (HMM E-Value=0.87)
Length = 188
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 433 DSIDVTFVISSPPFSHLNWQ 374
++ D TFV+ PP+SH W+
Sbjct: 10 ETYDATFVVPPPPYSHFLWE 29
>SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)
Length = 451
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 433 DSIDVTFVISSPPFSHLNWQ 374
++ D TFV+ PP+SH W+
Sbjct: 151 ETYDATFVVPPPPYSHFLWE 170
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 433 DSIDVTFVISSPPFSHLNWQ 374
++ D TFV+ PP+SH W+
Sbjct: 268 ETYDATFVVPPPPYSHFLWE 287
>SB_48891| Best HMM Match : PQQ (HMM E-Value=0.73)
Length = 277
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 433 DSIDVTFVISSPPFSHLNWQ 374
++ D TFV+ PP+SH W+
Sbjct: 37 ETYDATFVVPPPPYSHFLWE 56
>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 32 IHWKQVPLVLQKTNL*RYQTK 94
+H++ +P V+QKTNL RY K
Sbjct: 24 VHFRSMPRVVQKTNLTRYNLK 44
>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
Length = 572
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 366 CKICQFRCEKGGDEITNVTSILSHLKVVHGVV 461
C+ C FRC + V ++ HLK HGV+
Sbjct: 506 CQSCNFRCHR-------VVDLIVHLKAAHGVI 530
>SB_39405| Best HMM Match : Pyridoxal_deC (HMM E-Value=1.8e-06)
Length = 1297
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 457 TPCTTFRCDSIDVTFVISSPPFSHLNWQIL 368
T CTT+ ++DV ++ P H+ W L
Sbjct: 424 TDCTTWELLNLDVDTIVEMPDKGHVTWDTL 453
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = -3
Query: 476 DLVSGDDAVHHLQVRQYRRHVRDLVATLLASELADFARIRVVFTLLKHFPYPFRFSLFDF 297
D V+ + A+ + Q RD + S L+DFA ++ + TL+ P + ++
Sbjct: 267 DEVNNEGAIGLWMIHQCPASFRDNEIKAICSRLSDFAVVKSLQTLMDSRPVHYNGVVYRN 326
Query: 296 LCIADCSTFTSRNITSP 246
A+C + +N+ P
Sbjct: 327 RFCAECHGY-HQNVVDP 342
>SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 293 TRNRKGKNEMDMESXXXXXXXXXFVQNLPVQMREGWRRDHE 415
T+ KG+ E+ + PV M EGWRRD E
Sbjct: 10 TKENKGEQGRTRENKELREVHADSRRLRPVDMEEGWRRDKE 50
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 213 IRIVLSVISFVIVRAIFIVIPHTLINKLWFHFG 115
I V+ +I I+ I I+I +IN+L+ H G
Sbjct: 684 IVFVIIIIIITIITTIIIIITIAIINRLYHHHG 716
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 745 ARHKAADAISRHPTGSTTPEMMTLPDD 771
>SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)
Length = 359
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 4 SGPAKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNES 147
S P K+ L+ P G KD+ ++IP D ++V+ +P+ S
Sbjct: 43 SVPEKKPLTSTLKIPPVGKEKDKDMSIPGLDLGSSVSSVSDPDISGAS 90
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 234 ARHKAADAISRHPTGSTTPEMMTLPDD 260
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 679 ARHKAADAISRHPTGSTTPEMMTLPDD 705
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 4 SGPAKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNES 147
S P K+ L+ P G KD+ ++IP D ++V+ +P+ S
Sbjct: 1172 SVPEKKPLTSTLKIPPVGKEKDKDMSIPGLDLGSSVSSVSDPDISGAS 1219
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 172 ARHKAADAISRHPTGSTTPEMMTLPDD 198
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDD 119
>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 51 ARHKAADAISRHPTGSTTPEMMTLPDD 77
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 209 ARHKAADAISRHPTGSTTPEMMTLPDD 235
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 272 ARHKAADAISRHPTGSTTPEMMTLPDD 298
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -1
Query: 493 QSGPVMIWSPETTPCTTFRCDSIDVTFVISSPPFSHLNWQILHEYASSSHSSNTFHIHFV 314
+SGPV + SP T T + S PFS + +++ S + F I F
Sbjct: 262 ESGPVAMGSPVPTEVTVMEGLRVGKVVSGSIAPFSTVQLEVVFAPVKSGSTMADFEISFS 321
Query: 313 FPFS 302
P S
Sbjct: 322 DPLS 325
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDD 119
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 286 ARHKAADAISRHPTGSTTPEMMTLPDD 312
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 AKRKCVDPLEAGPSGSAKDEFVTIPDE 93
A+ K D + P+GS E +T+PD+
Sbjct: 999 ARHKAADAISRHPTGSTTPEMMTLPDD 1025
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,889,184
Number of Sequences: 59808
Number of extensions: 431728
Number of successful extensions: 1378
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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