Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   2.1  
AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative odorant-b...    23   8.5  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.5  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   8.5  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -1

Query: 451 CTTF----RCDSIDVTFVISSPPF-SHLNWQILHEYASSSH 344
           C TF    R   ID+TF   SP   S +NW++ + Y  S H
Sbjct: 157 CPTFVRNSRTSIIDLTFC--SPALASSMNWRVSNAYTLSDH 195


>AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative
           odorant-binding protein OBPjj17 protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 605 GRNKQGGGTYPRGLTR 558
           G+  Q GG YPRG  R
Sbjct: 253 GQYDQRGGNYPRGTER 268


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 381  FRCEKGGDEITNVTSILSHLKVVHGVVSGDQIITGPDCER 500
            ++  K GD   +++ +LS        + G Q+ + PDC R
Sbjct: 979  WQSRKHGDVTFHLSQVLSGHGFFREHLCGMQLTSSPDCTR 1018


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 648 RAAPPFKPERITASRQK*AGRWYLPARTHKRSYHQC 541
           RAAPP   ER+   R    G W    R+     + C
Sbjct: 650 RAAPPTPRERVRCYRCLELGHWAHDCRSPDDRQNMC 685


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,750
Number of Sequences: 2352
Number of extensions: 14312
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)