Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024211-4|AAP82631.1|  487|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b prote...    29   3.9  
U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF067946-3|AAC17682.1|  288|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z72514-9|CAA96680.3|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = -2

Query: 246 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFV 67
           +C ++ T++  + + L VI  VI R +  VI    ++ +  H  S SI L  +W+  K  
Sbjct: 276 TCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFALKLA 335

Query: 66  FCRTRGTCFQWIYAFSFRWST 4
               +       +  +  W+T
Sbjct: 336 HPSAQPVAAWVFFTSNLAWTT 356


>Z68001-3|CAO78709.1|  449|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 449

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = -2

Query: 246 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFV 67
           +C ++ T++  + + L VI  VI R +  VI    ++ +  H  S SI L  +W+  K  
Sbjct: 276 TCVSLATTNCLLIVSLLVIKLVIERFVVNVISTRSVSSIETHLVSQSIYLFSMWFALKLA 335

Query: 66  FCRTRGTCFQWIYAFSFRWST 4
               +       +  +  W+T
Sbjct: 336 HPSAQPVAAWVFFTSNLAWTT 356


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 231 KTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTR 52
           KT  +HI++ +  +   +++A+F+V+P T I  L  +F S  I      Y +  +    +
Sbjct: 627 KTVKYHIQVTVLFLCSCVIQALFVVLPVTHI-VLCVYFDSFKIYTKDYIY-YSLLTQAHQ 684

Query: 51  GTCFQWIYAFS 19
           GT F   Y  S
Sbjct: 685 GTAFTLFYVLS 695


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 150 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 25
           HT+  K+WFH+G D +VL   W    K       G  F  WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157


>AC024211-4|AAP82631.1|  487|Caenorhabditis elegans Hypothetical
           protein Y76B12C.6 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 581 TYPRGLTRGPTTSVR*STSRLLNLLFVAFAVGTGYDLVSGDDAVHHL 441
           T+P G    P T+ + S SR+L+   +A    T    ++GD  V  L
Sbjct: 144 TFPVGTLNKPKTNEQMSASRILDAAILAMNTNTNLPPIAGDQPVDTL 190


>Z49908-7|CAA90099.1|  294|Caenorhabditis elegans Hypothetical
           protein C07E3.8 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 342 ECEDDAYSCKICQFRCEKGGDEITNVTSILSHLKVVHGVV 461
           EC+DD Y CK C  R      EI  +      LK V GV+
Sbjct: 15  ECDDD-YVCKFCTVRVNNWKIEIYQLWHYFFFLKDVVGVI 53


>AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b protein
           protein 51 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 445 TFRCDSIDVTFVISSPPFSHLNW--QILHEYASSSHSSNTF 329
           T+  DS    FV+S+P F+  NW  Q+L+ + SS   S  F
Sbjct: 367 TYIFDSSKSKFVVSAPQFNLKNWLKQLLYIFGSSKIDSVEF 407


>U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical
           protein ZK177.3 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 306 KGKTKWIWKVFEECEDDAYSCKICQFRCEKGGDEITNVTSILSHLKVVHGVVSGDQIITG 485
           + K K I  V  EC+   + C++C F+        T  T + SH    HG +    +I  
Sbjct: 19  ENKPKLITHVDLECKHKYFRCELCDFKS-------TQKTGLTSH---YHGHIRQSNVIHC 68

Query: 486 PDCER 500
           P C++
Sbjct: 69  PYCKK 73


>AF067946-3|AAC17682.1|  288|Caenorhabditis elegans Hypothetical
           protein W02G9.4 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 542 VR*STSRLLNLLFVAFAVGTGYDLVSGDDAVH 447
           ++ S  RL++  FVAF    GYD+VS  D  +
Sbjct: 159 IKVSADRLISFQFVAFNTEDGYDVVSVYDGAN 190


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 463 ETTPCTTFRCDSIDVTFVISSPPFSHLNWQILHEYASSSHSSNTFHIHF 317
           ++TP T +       TF+ S P F H NW + +  A ++ + N   + F
Sbjct: 215 QSTPRTPYCMSPKGFTFLSSVPTFEHYNW-VTNSSAMATANDNCLVLVF 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,340,254
Number of Sequences: 27780
Number of extensions: 316900
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)