Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.85 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 378 QFRCEKGGDEITNVTSILSHLKVVH 452
           +FRCE     +T++T +  H++ VH
Sbjct: 2   EFRCEPCNKILTSLTRLRRHIQNVH 26


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 252 ISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 139
           +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 391 VSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 279 AVGDAQEIEKGKTKWIWKVFEECEDDAYS 365
           A+ D+Q  EK K  + WK  E    + Y+
Sbjct: 14  AISDSQAQEKLKNIYSWKALEFAFPNGYA 42


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 381 FRCEKGGDEITNVTSILSHLK 443
           F+CEK      N + + SHLK
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLK 37


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 426 ILSHLKVVHGVVSGDQIITGPDCERDE 506
           I+++   VHGV+     I   D ++DE
Sbjct: 104 IIAYTGDVHGVIGAGHWIGDHDVDKDE 130


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 448 TTFRCDSIDVTFVISSPPFSH 386
           + F   +I V+F+ + PP+SH
Sbjct: 133 SAFSDKNIHVSFLRTVPPYSH 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,930
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)