Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1075
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    33   0.22 
At5g58820.1 68418.m07370 subtilase family protein contains simil...    30   1.6  
At3g52340.2 68416.m05753 sucrose-phosphatase 2 (SPP2) identical ...    29   2.1  
At3g52340.1 68416.m05752 sucrose-phosphatase 2 (SPP2) identical ...    29   2.1  
At5g58950.1 68418.m07384 protein kinase family protein concontai...    29   2.7  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   6.3  
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof...    27   8.4  
At4g22060.1 68417.m03190 F-box family protein contains F-box dom...    27   8.4  
At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    27   8.4  
At3g18470.1 68416.m02347 expressed protein similar to PGPS/D12 [...    27   8.4  

>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 16  KRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 153
           K+K VD L++G S   K++   +P +     V  KME E  N+++W
Sbjct: 84  KQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAIW 129


>At5g58820.1 68418.m07370 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 703

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 470 VSGDDAVHHLQVRQYRRHVRDLVATLLASELADFARIRVVFTLLKHFPYPFRFSL-FDFL 294
           V+GD +V    VR Y+R      A L  SE    A +  V ++  +  Y  + +  +DFL
Sbjct: 56  VTGDSSVEGRLVRSYKRSFNGFAARLTESERIRVAEMEGVVSVFPNINYKLQTTASWDFL 115

Query: 293 CIADCSTFTSRNI 255
            + +    T RN+
Sbjct: 116 GLKEGKN-TKRNL 127


>At3g52340.2 68416.m05753 sucrose-phosphatase 2 (SPP2) identical to
           sucrose-phosphatase (SPP2) [Arabidopsis thaliana]
           GI:13811669; supporting cDNA
           gi|13811668|gb|AF356816.1|AF356816
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 318 KWIWKV--FEECEDDAYSCKICQFRCEKGGD 404
           KWI K   +E+CED++  CK       KGGD
Sbjct: 368 KWIVKFDKWEQCEDESQCCKTTVEFTSKGGD 398


>At3g52340.1 68416.m05752 sucrose-phosphatase 2 (SPP2) identical to
           sucrose-phosphatase (SPP2) [Arabidopsis thaliana]
           GI:13811669; supporting cDNA
           gi|13811668|gb|AF356816.1|AF356816
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 318 KWIWKV--FEECEDDAYSCKICQFRCEKGGD 404
           KWI K   +E+CED++  CK       KGGD
Sbjct: 368 KWIVKFDKWEQCEDESQCCKTTVEFTSKGGD 398


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 70  EFVTIPDEDENNAVAPKMEPEFVNE 144
           + +T+PD+D+N  +  ++E +F  E
Sbjct: 234 KLITVPDDDDNGCLGARLEKQFTKE 258


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 31  DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 153
           +PLE    G   D F T+P+        P +E +    ++W
Sbjct: 550 EPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLW 590


>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 411

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 288 DAQEIEKGKTKWIWKVFEECEDDA 359
           + Q ++KGK++ IW+  EE ++D+
Sbjct: 113 EEQRVKKGKSRIIWEEEEEADEDS 136


>At4g22060.1 68417.m03190 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 399

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 102 VLIFVWYRHKFV-FCRTRGTCFQWIYA 25
           +LI V+ R  FV F RT+  C  W+YA
Sbjct: 20  LLIMVFERLGFVDFQRTKSVCLAWLYA 46


>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 6   WTSETKMRRSTGSRSLWFC 62
           WT+  ++ +  G R++WFC
Sbjct: 377 WTASQELHKIQGKRNIWFC 395


>At3g18470.1 68416.m02347 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 133

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 122 ILGATALFSSSSGIVTNSSFAEPEGPASSGSTHF 21
           ++G   LFS +      S F  PE P S   THF
Sbjct: 57  VVGLPCLFSCTYRTKIRSKFGLPESPTSDCVTHF 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,539,221
Number of Sequences: 28952
Number of extensions: 299395
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)