Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1074
         (629 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LEY8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.7  
UniRef50_Q8WRD2 Cluster: Cysteine repeat modular protein 1 PbCRM...    33   7.5  
UniRef50_Q4Z2N1 Cluster: Putative uncharacterized protein; n=5; ...    33   7.5  
UniRef50_A0C5G8 Cluster: Chromosome undetermined scaffold_15, wh...    33   7.5  
UniRef50_A0RW82 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  

>UniRef50_Q6LEY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 573

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
 Frame = +2

Query: 464 IQLKN*LYFCNNFFL-TDILNLIL------VYLNWICNFYMSFYCNNQDSYLPKLC 610
           I L N  YF NN F   +  N+I+      + L++I  FY+ ++ +NQ+ Y+P++C
Sbjct: 461 IYLNNKAYFMNNAFCYLNNENIIMSNEMLNIDLDYILLFYILYFNDNQNLYIPRVC 516


>UniRef50_Q8WRD2 Cluster: Cysteine repeat modular protein 1 PbCRM1;
            n=10; Plasmodium (Vinckeia)|Rep: Cysteine repeat modular
            protein 1 PbCRM1 - Plasmodium berghei
          Length = 3087

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -1

Query: 584  DYYNKMTYRNYISN*DTQVLSSECLLKKNYYKNTTSFSTGSYLNLFLVMVII 429
            D YNKMT      N   +++S +CLL+  YY N T   +  Y +LF  ++ I
Sbjct: 2295 DVYNKMTNILTSENQKKKIISIDCLLR--YYFNLTYNDSFFYTSLFFFLIPI 2344


>UniRef50_Q4Z2N1 Cluster: Putative uncharacterized protein; n=5;
            Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein - Plasmodium berghei
          Length = 1538

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -1

Query: 581  YYNKMTYRNYIS-------N*DTQVLSSECLLKKNYYKNTTSFSTGSYLN 453
            Y+NK  ++NYIS       + + + LS+ECL    Y  N + +   ++LN
Sbjct: 916  YFNKFVFKNYISYLILLSNDEEIKYLSNECLFISGYKDNNSDYHQSTHLN 965


>UniRef50_A0C5G8 Cluster: Chromosome undetermined scaffold_15, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_15,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1752

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 482 LYFCNNFFLTDILNLILVYLNWICNFYMSFYCNNQDSYLPKLCVSVVDT 628
           LYF N     +++ L++++L ++  F  +FY      +L K C+ ++ +
Sbjct: 207 LYFQNRSAFNNVVQLLMMHLYYLSQFINAFYVGTFPPHLSKFCLILISS 255


>UniRef50_A0RW82 Cluster: Putative uncharacterized protein; n=2;
           Thermoprotei|Rep: Putative uncharacterized protein -
           Cenarchaeum symbiosum
          Length = 125

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 100 VSYIRT**FMSNIRTTSDQREREIERVHMKLIIRFIY-GHGSRAN 231
           VSY+R      N+R   D++E E   VH  + +RF Y GHG R N
Sbjct: 57  VSYLRHNAVFINVRKIPDEKELEKTIVHELIHMRFQYLGHGRRFN 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,193,950
Number of Sequences: 1657284
Number of extensions: 8153933
Number of successful extensions: 16680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16655
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)