Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1074
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 491 KNTTSFSTGSYLNLFLVMVII*KEVQNNRQYYLRV*NTYLFDVT-NLCTKEC 339
           K   +   GS++  ++  VI  +E +   + Y     TYLFD+  N   ++C
Sbjct: 511 KTMKTIKKGSFVTQYVGEVITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQC 562


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 590 YPDYYNKMTYRNYISN*DTQVLSSECLLKKNYYK 489
           YP YY  MTY N +      + S+  + K  Y +
Sbjct: 292 YPGYYPTMTYSNGLPFPQRPIWSNFPIYKYKYIR 325


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 590 YPDYYNKMTYRNYISN*DTQVLSSECLLKKNYYK 489
           YP YY  MTY N +      + S+  + K  Y +
Sbjct: 292 YPGYYPTMTYSNGLPFPQRPIWSNFPIYKYKYIR 325


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 528 YLCISIGYVISICHFI 575
           +LCIS+ Y+I +  FI
Sbjct: 402 FLCISLVYIIMLIIFI 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,501
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)