Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1073X
         (454 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.77 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.77 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   9.4  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 7   FTFGTEVVGKFLSKHEFDLICRAHQVVEDGYEFFAKRQL 123
           F    + +GK  +K ++ ++   HQ VE   EF+  R +
Sbjct: 143 FADAPDAIGKTRTKDKYRVVYTDHQRVELEKEFYYSRYI 181


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 255 LNMGRPNTPPRAQPKN 302
           +N+ +P TPP  +P N
Sbjct: 224 VNLSKPGTPPSGEPGN 239


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 70  RAHQVVEDGYEFFAKRQLVTLFSA 141
           R + V E   EF+A  + +T FSA
Sbjct: 147 RVNSVQEPNNEFYAMGRSLTTFSA 170


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 202 MCSFQILKPADKR 240
           +C+F IL P D+R
Sbjct: 8   LCAFLILTPTDQR 20


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 361 PSPLYTYNTLNG 396
           P P  T+N+LNG
Sbjct: 180 PEPPVTFNSLNG 191


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 136 SAPNYCGEFDNAGALMSVDETLMC 207
           SAP+ CGE  +   L  V     C
Sbjct: 33  SAPSICGEHGHCVNLPGVGHRCQC 56


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 313 NGPTRAPSADTRMDTPPSPLYTYNTLNGLMFLVNLC 420
           +G   +PS +T   +  SP    + L+G   L ++C
Sbjct: 54  HGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSIC 89


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   VSFTFGTEVVGKFLSKHEFDLICRAHQV 84
           VS T GT V+G F    +   +C+ +++
Sbjct: 288 VSATAGTTVIGAFDPIEKIADVCQKYKL 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,856
Number of Sequences: 336
Number of extensions: 2283
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)