Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1073X
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.89 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.6  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   6.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 128 VTSCLFAKNSYPSSTTWCARQIKSNSCLDKNL 33
           V SC     SYP  T  C+  I+S S   ++L
Sbjct: 129 VLSCAMKFESYPHDTQICSMMIESLSHTTQDL 160


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 394 GLMFLVNLCFLIECMSVKV 450
           G +FL +LC L++ +  KV
Sbjct: 8   GFLFLASLCLLVQAVPNKV 26


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 257  QHGPPQHAAARTAQEQEELMAPHARRP 337
            QH PP ++    +  Q++ + P + +P
Sbjct: 1266 QHAPPAYSCGTVSVPQQQQLPPSSPQP 1292


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 394 GLMFLVNLCFLIECMSVKV 450
           G +FL +LC L++ +  KV
Sbjct: 8   GFLFLASLCLLVQAVPNKV 26


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 412 SLKTSTRSRYCKCTAVREGCPC 347
           S++ ST+  + KC +++   PC
Sbjct: 87  SMQDSTKKLFNKCKSIQNEDPC 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 166 NAGALMSVDETLMCSFQILKPADKRKLYSGSTW 264
           N   +  ++  +  S   LKP DK ++   +TW
Sbjct: 462 NRKQISELESNMQISPNELKPNDKSQVIKQNTW 494


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 437 MHSIKKQRFTKNIN 396
           +H +KK+R  KN+N
Sbjct: 3   VHQLKKKRRKKNLN 16


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 116 LFAKNSYPSSTT 81
           LFA N YP +TT
Sbjct: 357 LFADNPYPLNTT 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,316
Number of Sequences: 438
Number of extensions: 2396
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)