Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1072
(651 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 181 2e-44
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 174 2e-42
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 149 6e-37
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 153 3e-36
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 135 8e-31
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 131 1e-29
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 130 4e-29
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 124 1e-27
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 119 5e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 117 2e-25
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 106 5e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 84 2e-15
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 77 3e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 73 6e-12
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 70 6e-11
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 66 9e-10
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 65 2e-09
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 62 1e-08
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 62 1e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 58 1e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 56 6e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 56 7e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 2e-06
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 51 3e-05
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 49 8e-05
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 49 8e-05
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 48 1e-04
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 48 2e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 47 5e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 44 0.004
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 42 0.013
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.052
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 38 0.16
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 36 0.84
UniRef50_UPI000069FB47 Cluster: Fibrillin-1 precursor.; n=2; Xen... 34 2.6
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 34 3.4
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 7.8
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 181 bits (440), Expect = 2e-44
Identities = 88/137 (64%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
Frame = +1
Query: 244 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 423
P AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 424 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRE 600
VTHDGRTIRYPDPLI NDS+Q+DIA+ ++ G C G RNLGRVGT RE
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Query: 601 T-SGSFDIVHIKDSTGH 648
GSFDIVHIKDS GH
Sbjct: 200 RHPGSFDIVHIKDSQGH 216
Score = 157 bits (382), Expect = 2e-37
Identities = 73/82 (89%), Positives = 76/82 (92%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V KIV QRL+KVDGKVRTDPTY
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTY 82
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 174 bits (423), Expect = 2e-42
Identities = 81/134 (60%), Positives = 100/134 (74%), Gaps = 2/134 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD
Sbjct: 84 AGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHD 143
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRET-SG 609
RTIRYPDPLIKVND+IQ+D+ T ++ G C G NLGR+G RE G
Sbjct: 144 ARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPG 203
Query: 610 SFDIVHIKDSTGHT 651
SFD+VH+KD+ G++
Sbjct: 204 SFDVVHVKDANGNS 217
Score = 151 bits (365), Expect = 2e-35
Identities = 69/82 (84%), Positives = 74/82 (90%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V KI QR IK+DGKVRTD TY
Sbjct: 61 VKKICMQRFIKIDGKVRTDITY 82
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 149 bits (360), Expect = 8e-35
Identities = 68/81 (83%), Positives = 73/81 (90%)
Frame = +2
Query: 11 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 190
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 191 LKIVKQRLIKVDGKVRTDPTY 253
KI QR IK+DGKVRTD TY
Sbjct: 62 KKICMQRFIKIDGKVRTDITY 82
Score = 109 bits (262), Expect(2) = 6e-37
Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Frame = +1
Query: 364 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPG 540
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T ++ +
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 541 TCDDHGRRNLGRVGTSCPRET-SGSFDIVHIKDSTGHT 651
C G NLGR+G RE GSFD+VH+KDSTG++
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNS 249
Score = 67.7 bits (158), Expect(2) = 6e-37
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 366
GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 85 GFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 153 bits (371), Expect = 3e-36
Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+D
Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
GRTIRYPDPLIK ND+I+LD+ ++ G G RN GRVG RE G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203
Query: 610 SFDIVHIKDSTGH 648
SF+ +HI+DSTGH
Sbjct: 204 SFETIHIQDSTGH 216
Score = 138 bits (335), Expect = 8e-32
Identities = 63/82 (76%), Positives = 71/82 (86%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V+ I+ QR I+VDGKVRTD TY
Sbjct: 61 VISILMQRHIQVDGKVRTDKTY 82
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 135 bits (327), Expect = 8e-31
Identities = 63/114 (55%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Frame = +1
Query: 316 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 495
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 496 IATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRET-SGSFDIVHIKDSTGHT 651
+ T ++ G C G NLGR+G RE GSFD+VH+KD+ G++
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNS 189
Score = 126 bits (303), Expect = 6e-28
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 188 VLKIVKQRLIKVDGK 232
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 131 bits (317), Expect = 1e-29
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 2/132 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD
Sbjct: 197 GLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDS 256
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SGS 612
RTIR+P+P IK+ D+++ D+ ++ + L G C N+GRVG E GS
Sbjct: 257 RTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGS 316
Query: 613 FDIVHIKDSTGH 648
FDI H+KD+ G+
Sbjct: 317 FDICHVKDAKGN 328
Score = 80.2 bits (189), Expect = 4e-14
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 34/119 (28%)
Frame = +2
Query: 11 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 103
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 104 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTD---PTYLLDL 265
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D PT L+D+
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDV 201
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 130 bits (313), Expect = 4e-29
Identities = 56/82 (68%), Positives = 65/82 (79%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V IVK R IK+DGK+RTD Y
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRY 82
Score = 128 bits (309), Expect = 1e-28
Identities = 64/133 (48%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDG
Sbjct: 85 GFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDG 144
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SGS 612
RTIRYP P ++ ND+I+L++ T ++ G T G +GRVG RE GS
Sbjct: 145 RTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGS 204
Query: 613 FDIVHIKDSTGHT 651
F+IVHIKD+ G+T
Sbjct: 205 FEIVHIKDAKGNT 217
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 124 bits (300), Expect = 1e-27
Identities = 60/130 (46%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +1
Query: 265 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 444
MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T
Sbjct: 97 MDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHT 156
Query: 445 IRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDHGRRNLGRVGTSCPRETSG-SFDI 621
+R+PD LIKVND+IQ+D+ T ++ + C G N GR+G RE SFD
Sbjct: 157 VRHPDSLIKVNDTIQIDLETGKITALKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDT 216
Query: 622 VHIKDSTGHT 651
H+KD+ ++
Sbjct: 217 FHVKDANSNS 226
Score = 122 bits (293), Expect = 1e-26
Identities = 61/95 (64%), Positives = 75/95 (78%), Gaps = 3/95 (3%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDE 70
Query: 188 VLKIVKQRLIKVDGKVRTD---PTYLLDLWMLSQL 283
V KI Q IKVDGK+RTD P +++D+ + ++
Sbjct: 71 VKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKM 105
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 119 bits (287), Expect = 5e-26
Identities = 59/131 (45%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDG
Sbjct: 99 GLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDG 158
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRETS-GS 612
RTI Y DP ++V+D+++ +I T + + G N+GRVGT E S
Sbjct: 159 RTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMAS 218
Query: 613 FDIVHIKDSTG 645
FDIVH+KD++G
Sbjct: 219 FDIVHLKDTSG 229
Score = 115 bits (276), Expect = 1e-24
Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKE 74
Query: 188 VLKIVKQRLIKVDGKVRTD---PTYLLDLWMLSQLRRL 292
+ IVK+RL+KVDGKVRT+ PT L+D+ L + L
Sbjct: 75 AVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNEL 112
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 117 bits (282), Expect = 2e-25
Identities = 63/132 (47%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHD
Sbjct: 84 AGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHD 143
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPR-ETSG 609
GRTIR+P+ LIK NDSI LD+ ++ S G+ C N+GR+G G
Sbjct: 144 GRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQG 203
Query: 610 SFDIVHIKDSTG 645
S IV +KD G
Sbjct: 204 SDSIVCLKDFNG 215
Score = 107 bits (258), Expect = 2e-22
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
L I+K+ I VDGKVR D +
Sbjct: 61 SLNILKKNEIYVDGKVRADKNF 82
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 106 bits (254), Expect = 5e-22
Identities = 49/77 (63%), Positives = 56/77 (72%)
Frame = +2
Query: 23 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 202
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 203 KQRLIKVDGKVRTDPTY 253
+Q L+ VD R D Y
Sbjct: 63 RQGLVHVDNHPRRDGKY 79
Score = 101 bits (241), Expect = 2e-20
Identities = 56/132 (42%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHD
Sbjct: 81 AGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHD 140
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
G IRYPDP + D+I ++ + G G N GR+G E G
Sbjct: 141 GHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPG 200
Query: 610 SFDIVHIKDSTG 645
+F+I H+KD++G
Sbjct: 201 AFNIAHLKDASG 212
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 84.2 bits (199), Expect = 2e-15
Identities = 39/87 (44%), Positives = 57/87 (65%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTYLLDLW 268
+ I+ ++ IKV+G+VRT+ + + L+
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLF 87
Score = 78.2 bits (184), Expect = 2e-13
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = +1
Query: 247 YLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLV 426
+ G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V
Sbjct: 81 HFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIV 139
Query: 427 THDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDHGR-RNLGRVGTSCPRET 603
+ G +IR+ DP I + +I++ T+++ P R + GRVG T
Sbjct: 140 SSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVINTIST 199
Query: 604 SGSFDIVHIKDSTGHT 651
G + + D G+T
Sbjct: 200 QGKETVYGMTDFAGNT 215
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 77.4 bits (182), Expect = 3e-13
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 17 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 193
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 194 KIVKQRLIKVDGKVRTDPTYLLDLWMLSQLRR 289
KI+ + I VDG VR +P + + + + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +1
Query: 244 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 423
P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 424 VTHDGRT--IRYPDP------LIKVNDSIQLDI 498
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 72.9 bits (171), Expect = 6e-12
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Frame = +2
Query: 14 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 193
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 194 KIVKQRLIKVDGKVRTD---PTYLLDLWMLSQL 283
KI++ I +DG R + P L+D+ + ++
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEM 96
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 69.7 bits (163), Expect = 6e-11
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Frame = +2
Query: 29 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 205
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 206 QRLIKVDGKVRTD---PTYLLDL 265
+ +KVDG VR D P L+D+
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDV 85
Score = 39.1 bits (87), Expect = 0.090
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDV+ I T E++R++ D + + I+ EEA KL +V+ L HDG
Sbjct: 81 GLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDG 140
Query: 439 R---TIRYPDPLIKVNDSIQLDI 498
R T IK DS+ D+
Sbjct: 141 RNLITTLEAGKQIKTFDSVLYDL 163
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 65.7 bits (153), Expect = 9e-10
Identities = 31/85 (36%), Positives = 49/85 (57%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 209 RLIKVDGKVRTDPTYLLDLWMLSQL 283
+KVDGKVR D Y + L + +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 37.5 bits (83), Expect = 0.28
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDV+ + NE +R+I D RI EA K+C+++ L HDG
Sbjct: 80 GLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDG 139
Query: 439 RTI 447
R I
Sbjct: 140 RNI 142
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +2
Query: 14 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 193
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 194 KIVKQRLIKVDGKVRTD---PTYLLDL 265
+I+ R+I+VDG+V TD P L+D+
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGLMDV 92
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDV+ I + +R++ D + I PEEA YKL +++R T HDG
Sbjct: 88 GLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDG 147
Query: 439 RTI 447
R +
Sbjct: 148 RNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 8 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 184
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 185 EVLKIVKQRLIKVDGKVRTD 244
E K++ + +VDG VR D
Sbjct: 61 EARKLISEGHFRVDGVVRKD 80
Score = 44.8 bits (101), Expect = 0.002
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
GFMDV+ + T E FR++ Y VK F +H I EE K +++ T L HD
Sbjct: 86 GFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHD 144
Query: 436 GRTI--RYPDP------LIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGT- 585
GR I R DP + + D++ + + + G G RN+GRVG
Sbjct: 145 GRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204
Query: 586 -SCPRETSGSFDIVHIKDSTGH 648
S + +V ++D++G+
Sbjct: 205 KSVQKGWGRKRTLVTLEDASGN 226
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 61.7 bits (143), Expect = 1e-08
Identities = 29/80 (36%), Positives = 46/80 (57%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 209 RLIKVDGKVRTDPTYLLDLW 268
+ VDGKVR D Y + ++
Sbjct: 65 GKVLVDGKVRKDYRYTVGMF 84
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 58.4 bits (135), Expect = 1e-07
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG
Sbjct: 86 GFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDG 143
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCD-DHGRRNLGRVGT 585
+ + + V D I L + + L G C G ++ G +GT
Sbjct: 144 KNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGT 193
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +2
Query: 17 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 196
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 197 IVKQRLIKVDGKVRTD 244
I+ + VDG+V D
Sbjct: 65 IINSGNVLVDGRVIKD 80
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.4 bits (130), Expect = 6e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 209 RLIKVDGKVRTD 244
R + VDG++ TD
Sbjct: 65 RQVLVDGRIETD 76
Score = 39.9 bits (89), Expect = 0.052
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDG
Sbjct: 82 GLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDG 139
Query: 439 RTIRYPD 459
R I D
Sbjct: 140 RNILVSD 146
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 56.0 bits (129), Expect = 7e-07
Identities = 32/96 (33%), Positives = 47/96 (48%)
Frame = +1
Query: 253 SAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 432
+ GFMDV+ I E +R++Y+ +G + + T E A KL KV+ P N L TH
Sbjct: 79 AVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTH 136
Query: 433 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG 540
DGRT D KV D + + ++ + PG
Sbjct: 137 DGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 35 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 214
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 215 IKVDGK 232
+KVDGK
Sbjct: 66 VKVDGK 71
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Frame = +2
Query: 35 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 214
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 215 IKVDGKVRTDPTYLLDLW 268
+ ++G + TD +D++
Sbjct: 64 VLLNGHIVTDEHIGIDVF 81
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/79 (36%), Positives = 40/79 (50%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 209 RLIKVDGKVRTDPTYLLDL 265
+ VDGKVR D Y + L
Sbjct: 63 GKVLVDGKVRRDYKYPVGL 81
Score = 37.1 bits (82), Expect = 0.36
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G MDVV I + R+I D T I+ E+AKYK ++ T V L DG
Sbjct: 80 GLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDG 139
Query: 439 RTI 447
R I
Sbjct: 140 RNI 142
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 49.2 bits (112), Expect = 8e-05
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 209 RLIKVDGKVRTD---PTYLLDL 265
+ VDG R D P L+D+
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDI 85
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 49.2 bits (112), Expect = 8e-05
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 209 RLIKVDGKVRTDPTYLLDLW 268
+ VDG R D + + L+
Sbjct: 63 GKVLVDGISRKDLRFPVGLF 82
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
G DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 80 GLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDG 138
Query: 439 RTI 447
I
Sbjct: 139 TNI 141
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 48.4 bits (110), Expect = 1e-04
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +2
Query: 26 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 205
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 206 QRLIKVDGKVRTDPTYLLDLWMLSQLRRL 292
QR + V+G+ D L ++ + + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 42.7 bits (96), Expect = 0.007
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +1
Query: 250 LSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 429
+ G D+VSI K + +R+ DVKG I E AK +LCK++ T L
Sbjct: 77 MGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNF 136
Query: 430 HDGRTIRYPDPLIKVNDSIQLDIAT 504
G + D K DS+ + + T
Sbjct: 137 AFGANV-LADNTYKAKDSVVVTLGT 160
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +2
Query: 23 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 199
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 200 VKQRLIKVDGKVRTD---PTYLLDLWMLSQL 283
+ + VDG+ D P L D+ + ++
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEI 96
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 46.8 bits (106), Expect = 5e-04
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Frame = +1
Query: 265 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 444
MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 87 MDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRE 146
Query: 445 IRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCP-RETSGSFD 618
++ IKV DS+ + + + G+ C ++LG + R+T
Sbjct: 147 LKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRK 206
Query: 619 IVHIKDSTG 645
++H++ G
Sbjct: 207 MIHLEKIDG 215
Score = 42.7 bits (96), Expect = 0.007
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 188 VLKIVKQRLIKVDGK 232
K+VK + V+GK
Sbjct: 61 AQKVVKTGFLYVNGK 75
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 43.6 bits (98), Expect = 0.004
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHD 435
GFMDV+SI+ + ++YD KG+ I + P KL K VK+ G + L HD
Sbjct: 82 GFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHD 140
Query: 436 GRTIRYPDPLIKVNDSIQLDI 498
G+TI I +D + + I
Sbjct: 141 GKTIVTDRKDINTSDVLLMKI 161
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/91 (20%), Positives = 44/91 (48%)
Frame = +2
Query: 35 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 214
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 215 IKVDGKVRTDPTYLLDLWMLSQLRRLMNCFV 307
+KVDG++ D + + + + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 41.9 bits (94), Expect = 0.013
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 29 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 208
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 209 RLIKVDGKVRTD 244
+ ++GK +D
Sbjct: 63 DNVLINGKAISD 74
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.052
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 35 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 214
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 215 IKVDGKV 235
+ VDGKV
Sbjct: 66 VMVDGKV 72
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 38.3 bits (85), Expect = 0.16
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +2
Query: 26 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 205
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 206 QRLIKVDGKVRT 241
++VDG RT
Sbjct: 68 SGNVEVDGVKRT 79
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 35.9 bits (79), Expect = 0.84
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = -1
Query: 486 DGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 307
+G+ D + + +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 306 TKQFISLLN*DNI 268
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
>UniRef50_UPI000069FB47 Cluster: Fibrillin-1 precursor.; n=2;
Xenopus tropicalis|Rep: Fibrillin-1 precursor. - Xenopus
tropicalis
Length = 925
Score = 34.3 bits (75), Expect = 2.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 640 WSP*CAQCRRSRMSLADTMCPRAPSYASRD 551
W P C +C + +T+CPR P +AS++
Sbjct: 79 WGPDCDECPEKGTTEFETLCPRGPGFASKE 108
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2
Query: 140 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 9
PG RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 4.5
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 195 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 25
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 24 LGPRAML 4
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 7.8
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 62 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 223
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,415,858
Number of Sequences: 1657284
Number of extensions: 15243582
Number of successful extensions: 44154
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 42458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44123
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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