Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1072
(651 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein. 24 1.2
AY321476-2|AAQ23387.1| 257|Tribolium castaneum Ase protein. 23 1.6
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 23 2.9
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 23 2.9
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 23 2.9
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 23 2.9
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 23 2.9
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 23 2.9
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 23 2.9
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 23 2.9
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 23 2.9
AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein. 22 5.0
AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 22 5.0
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 22 5.0
DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase rever... 21 8.8
>AY884065-1|AAX84206.1| 697|Tribolium castaneum laccase 1 protein.
Length = 697
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 146 KSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 51
K PG S GD + + V H T++ W
Sbjct: 104 KMPGPSVEVCLGDEVIIDVVNHLSSDSTTIHW 135
>AY321476-2|AAQ23387.1| 257|Tribolium castaneum Ase protein.
Length = 257
Score = 23.4 bits (48), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 472 VNDSIQLDIATTRLWTSSSLSPGTCDD 552
+ D + LD +T TSS SP T DD
Sbjct: 114 LEDLLALDESTVSSSTSSIPSPSTTDD 140
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 22.6 bits (46), Expect = 2.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 158 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLLDLWMLSQLR 286
R K+ LTG L K RL+ + P + D+ +L R
Sbjct: 202 RTKHRLTGETRLSATKGRLVITEPVGTKAPAFSTDIKVLGYQR 244
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 20 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 74
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.9
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A+ P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>AY884062-1|AAX84203.1| 712|Tribolium castaneum laccase 2B protein.
Length = 712
Score = 21.8 bits (44), Expect = 5.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -2
Query: 140 PGASTRATCGDRLTVSVHTHRQVCPTSMLW 51
PG S + GD++ + V H + ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201
Score = 21.0 bits (42), Expect = 8.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLG 79
+ R P +++K++N A LD+ G
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRRG 632
>AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein.
Length = 717
Score = 21.8 bits (44), Expect = 5.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = -2
Query: 140 PGASTRATCGDRLTVSVHTHRQVCPTSMLW 51
PG S + GD++ + V H + ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201
Score = 21.0 bits (42), Expect = 8.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLG 79
+ R P +++K++N A LD+ G
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRQG 632
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.8 bits (44), Expect = 5.0
Identities = 12/55 (21%), Positives = 21/55 (38%)
Frame = +1
Query: 340 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 504
H + P Y + +R+A P TH + +Y D + D++T
Sbjct: 64 HGLQPTMGDYTQLQPQRLAPTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118
>DQ372925-1|ABD17350.1| 596|Tribolium castaneum telomerase reverse
transcriptase protein.
Length = 596
Score = 21.0 bits (42), Expect = 8.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 356 RRLSTSCVKSSVWRPDLRMFR 418
R+++ C+KS WR L + +
Sbjct: 525 RKVTFQCLKSIAWRAFLAVLK 545
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,993
Number of Sequences: 336
Number of extensions: 3683
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -