Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1072
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 169 2e-43
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 169 2e-43
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 168 5e-43
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 3.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.1
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 5.4
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 25 7.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 169 bits (412), Expect = 2e-43
Identities = 81/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612
RTIRYPDPLIKVND+I+L++ T ++ + + G RN+GRVGT RE GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204
Query: 613 FDIVHIKDS 639
F+I+H+KD+
Sbjct: 205 FEIIHVKDA 213
Score = 137 bits (332), Expect = 1e-33
Identities = 61/82 (74%), Positives = 68/82 (82%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V I+ QRLIKVDGKVRTD T+
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTF 82
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 169 bits (412), Expect = 2e-43
Identities = 81/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612
RTIRYPDPLIKVND+I+L++ T ++ + + G RN+GRVGT RE GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204
Query: 613 FDIVHIKDS 639
F+I+H+KD+
Sbjct: 205 FEIIHVKDA 213
Score = 136 bits (328), Expect = 3e-33
Identities = 60/82 (73%), Positives = 68/82 (82%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V I+ QRLI+VDGKVRTD T+
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTF 82
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 168 bits (409), Expect = 5e-43
Identities = 80/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
Frame = +1
Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612
RTIRYPDPLIKVND+I+L++ T ++ + + G RN+GRVGT RE GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204
Query: 613 FDIVHIKDS 639
F+I+H+KD+
Sbjct: 205 FEIIHVKDA 213
Score = 137 bits (332), Expect = 1e-33
Identities = 61/82 (74%), Positives = 68/82 (82%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V I+ QRLIKVDGKVRTD T+
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTF 82
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 468 QSQRFHPVRHCNYEIMDFIKFES 536
++++ HPVRH YE + FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 131 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLLDLWM--LSQLRRLMNCF 304
LPLV ++ + + N L IV Q L+ V Y + LS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 305 V*SMMLRADSQSTVSPLRRLSTSCVK 382
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 268 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 444
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 445 IR 450
++
Sbjct: 1778 LK 1779
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 544 CDDHGRRNLGRVGTSCPRETSGSFDIVHIKDSTGH 648
C DHG +G G S ET+ + ++ + H
Sbjct: 253 CGDHGMNEVGNHGGSSSGETTAALSLLFPSNELSH 287
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 122 RECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLL 259
R LP+++ +L+ + +E ++++Q ++V V TDP YL+
Sbjct: 108 RRRLPVIMC---KLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 363 SLLRGDTVDCESALNIID*TKQ 298
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 137 LVIFLRNRLKYALTGNEVLKIV 202
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 256 QISRVSPNFPINLYEALFHNFQDFVSGQSIL 164
+ S++ P I+LY L+H+ +++ Q ++
Sbjct: 408 ETSKIDPRVVISLYPDLYHSELSYIAFQGVI 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,193
Number of Sequences: 5004
Number of extensions: 61136
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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