BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1072 (651 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 169 2e-43 SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 169 2e-43 SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 168 5e-43 SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.1 SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 3.1 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.1 SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 5.4 SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 25 7.2 SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.2 SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.5 SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.5 >SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 169 bits (412), Expect = 2e-43 Identities = 81/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%) Frame = +1 Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438 GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144 Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612 RTIRYPDPLIKVND+I+L++ T ++ + + G RN+GRVGT RE GS Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204 Query: 613 FDIVHIKDS 639 F+I+H+KD+ Sbjct: 205 FEIIHVKDA 213 Score = 137 bits (332), Expect = 1e-33 Identities = 61/82 (74%), Positives = 68/82 (82%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60 Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253 V I+ QRLIKVDGKVRTD T+ Sbjct: 61 VKAILMQRLIKVDGKVRTDSTF 82 >SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 169 bits (412), Expect = 2e-43 Identities = 81/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%) Frame = +1 Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438 GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144 Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612 RTIRYPDPLIKVND+I+L++ T ++ + + G RN+GRVGT RE GS Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204 Query: 613 FDIVHIKDS 639 F+I+H+KD+ Sbjct: 205 FEIIHVKDA 213 Score = 136 bits (328), Expect = 3e-33 Identities = 60/82 (73%), Positives = 68/82 (82%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60 Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253 V I+ QRLI+VDGKVRTD T+ Sbjct: 61 VKAILMQRLIQVDGKVRTDSTF 82 >SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 1|||Manual Length = 262 Score = 168 bits (409), Expect = 5e-43 Identities = 80/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%) Frame = +1 Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438 GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144 Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612 RTIRYPDPLIKVND+I+L++ T ++ + + G RN+GRVGT RE GS Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204 Query: 613 FDIVHIKDS 639 F+I+H+KD+ Sbjct: 205 FEIIHVKDA 213 Score = 137 bits (332), Expect = 1e-33 Identities = 61/82 (74%), Positives = 68/82 (82%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60 Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253 V I+ QRLIKVDGKVRTD T+ Sbjct: 61 VKAILMQRLIKVDGKVRTDSTF 82 >SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1428 Score = 26.6 bits (56), Expect = 3.1 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +3 Query: 468 QSQRFHPVRHCNYEIMDFIKFES 536 ++++ HPVRH YE + FE+ Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27 >SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 931 Score = 26.6 bits (56), Expect = 3.1 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = +2 Query: 131 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLLDLWM--LSQLRRLMNCF 304 LPLV ++ + + N L IV Q L+ V Y + LS+++ L+NCF Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434 Query: 305 V*SMMLRADSQSTVSPLRRLSTSCVK 382 + S + D + LR L +K Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 26.6 bits (56), Expect = 3.1 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 268 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 444 +V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777 Query: 445 IR 450 ++ Sbjct: 1778 LK 1779 >SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 25.8 bits (54), Expect = 5.4 Identities = 10/35 (28%), Positives = 16/35 (45%) Frame = +1 Query: 544 CDDHGRRNLGRVGTSCPRETSGSFDIVHIKDSTGH 648 C DHG +G G S ET+ + ++ + H Sbjct: 253 CGDHGMNEVGNHGGSSSGETTAALSLLFPSNELSH 287 >SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 183 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +2 Query: 122 RECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLL 259 R LP+++ +L+ + +E ++++Q ++V V TDP YL+ Sbjct: 108 RRRLPVIMC---KLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150 >SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1261 Score = 25.4 bits (53), Expect = 7.2 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -1 Query: 363 SLLRGDTVDCESALNIID*TKQ 298 S RGDT D +ALNI + TK+ Sbjct: 898 STRRGDTDDATTALNIFEETKR 919 >SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizosaccharomyces pombe|chr 2|||Manual Length = 953 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +2 Query: 137 LVIFLRNRLKYALTGNEVLKIV 202 L+ F+ RL++ LT E+LKI+ Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166 >SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 910 Score = 25.0 bits (52), Expect = 9.5 Identities = 8/31 (25%), Positives = 19/31 (61%) Frame = -3 Query: 256 QISRVSPNFPINLYEALFHNFQDFVSGQSIL 164 + S++ P I+LY L+H+ +++ Q ++ Sbjct: 408 ETSKIDPRVVISLYPDLYHSELSYIAFQGVI 438 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,935,193 Number of Sequences: 5004 Number of extensions: 61136 Number of successful extensions: 171 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 165 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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