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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1072
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   169   2e-43
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   169   2e-43
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   168   5e-43
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.1  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   3.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.1  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   5.4  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    25   7.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.2  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.5  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.5  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  169 bits (412), Expect = 2e-43
 Identities = 81/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
 Frame = +1

Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
           GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDG
Sbjct: 85  GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144

Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612
           RTIRYPDPLIKVND+I+L++ T ++ +     +       G RN+GRVGT   RE   GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204

Query: 613 FDIVHIKDS 639
           F+I+H+KD+
Sbjct: 205 FEIIHVKDA 213



 Score =  137 bits (332), Expect = 1e-33
 Identities = 61/82 (74%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V  I+ QRLIKVDGKVRTD T+
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTF 82


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  169 bits (412), Expect = 2e-43
 Identities = 81/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
 Frame = +1

Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
           GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDG
Sbjct: 85  GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144

Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612
           RTIRYPDPLIKVND+I+L++ T ++ +     +       G RN+GRVGT   RE   GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204

Query: 613 FDIVHIKDS 639
           F+I+H+KD+
Sbjct: 205 FEIIHVKDA 213



 Score =  136 bits (328), Expect = 3e-33
 Identities = 60/82 (73%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V  I+ QRLI+VDGKVRTD T+
Sbjct: 61  VKAILMQRLIQVDGKVRTDSTF 82


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  168 bits (409), Expect = 5e-43
 Identities = 80/129 (62%), Positives = 100/129 (77%), Gaps = 2/129 (1%)
 Frame = +1

Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
           GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDG
Sbjct: 85  GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144

Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSL-SPGTCDDHGRRNLGRVGTSCPRETS-GS 612
           RTIRYPDPLIKVND+I+L++ T ++ +     +       G RN+GRVGT   RE   GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204

Query: 613 FDIVHIKDS 639
           F+I+H+KD+
Sbjct: 205 FEIIHVKDA 213



 Score =  137 bits (332), Expect = 1e-33
 Identities = 61/82 (74%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V  I+ QRLIKVDGKVRTD T+
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTF 82


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 468 QSQRFHPVRHCNYEIMDFIKFES 536
           ++++ HPVRH  YE    + FE+
Sbjct: 5   ENEKIHPVRHSKYEDKSKLPFET 27


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +2

Query: 131 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLLDLWM--LSQLRRLMNCF 304
           LPLV    ++ +   + N  L IV Q L+     V     Y +      LS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434

Query: 305 V*SMMLRADSQSTVSPLRRLSTSCVK 382
           + S  +  D    +  LR L    +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 268  DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 444
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   KNVP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 445  IR 450
            ++
Sbjct: 1778 LK 1779


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 544 CDDHGRRNLGRVGTSCPRETSGSFDIVHIKDSTGH 648
           C DHG   +G  G S   ET+ +  ++   +   H
Sbjct: 253 CGDHGMNEVGNHGGSSSGETTAALSLLFPSNELSH 287


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 122 RECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYLL 259
           R  LP+++    +L+ +   +E  ++++Q  ++V   V TDP YL+
Sbjct: 108 RRRLPVIMC---KLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 363 SLLRGDTVDCESALNIID*TKQ 298
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 137 LVIFLRNRLKYALTGNEVLKIV 202
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 256 QISRVSPNFPINLYEALFHNFQDFVSGQSIL 164
           + S++ P   I+LY  L+H+   +++ Q ++
Sbjct: 408 ETSKIDPRVVISLYPDLYHSELSYIAFQGVI 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,193
Number of Sequences: 5004
Number of extensions: 61136
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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