Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1072
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 147 8e-36
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 143 9e-35
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 142 2e-34
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 31 0.60
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.80
04_03_1015 - 21734381-21736534 29 2.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.2
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 4.2
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.2
01_01_1097 + 8682250-8682337,8682406-8682474,8683014-8683222,868... 29 4.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.6
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 28 7.4
03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020 28 7.4
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 9.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 147 bits (356), Expect = 8e-36
Identities = 72/133 (54%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+D
Sbjct: 100 AGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTND 159
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRET-SG 609
GRTIRYPDPLIK ND+I++D+ T ++ G G RN GRVG RE G
Sbjct: 160 GRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKG 219
Query: 610 SFDIVHIKDSTGH 648
SF+ +H++D+ GH
Sbjct: 220 SFETIHVEDALGH 232
Score = 134 bits (324), Expect = 6e-32
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +2
Query: 11 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 190
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 191 LKIVKQRLIKVDGKVRTDPTY 253
+ I+ QR + VDGKVRTD TY
Sbjct: 78 ISILMQRHVMVDGKVRTDKTY 98
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 143 bits (347), Expect = 9e-35
Identities = 69/133 (51%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+D
Sbjct: 84 AGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYD 143
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
GRTIRYPDPLIK ND+I++D+ T ++ G G RN GRVG RE G
Sbjct: 144 GRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKG 203
Query: 610 SFDIVHIKDSTGH 648
SF+ +H++D+ GH
Sbjct: 204 SFETIHVEDALGH 216
Score = 136 bits (330), Expect = 1e-32
Identities = 61/82 (74%), Positives = 70/82 (85%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V+ I+ QR + VDGKVRTD TY
Sbjct: 61 VISILMQRHVLVDGKVRTDKTY 82
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 142 bits (345), Expect = 2e-34
Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
AGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+D
Sbjct: 84 AGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYD 143
Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
GRTIRYPDP+IK ND+I++D+ T ++ G G RN GRVG RE G
Sbjct: 144 GRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKG 203
Query: 610 SFDIVHIKDSTGH 648
SF+ +H++D+ GH
Sbjct: 204 SFETIHVEDALGH 216
Score = 136 bits (330), Expect = 1e-32
Identities = 61/82 (74%), Positives = 70/82 (85%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
V+ I+ QR + VDGKVRTD TY
Sbjct: 61 VISILMQRHVLVDGKVRTDKTY 82
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +2
Query: 65 LDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTD 244
+++L VY T +E P+ I + E L V ++ G R+
Sbjct: 73 VEELSNVYRGAQETNRKLYQELFPIQIMQMCGWLLKVVRWENLNCVH---MEAHGNRRSS 129
Query: 245 PTYLLDLWMLSQLRRLMNC 301
PTYL+ LWM+S L+ C
Sbjct: 130 PTYLVMLWMISVASLLITC 148
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 152 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 51
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +2
Query: 365 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 490
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 165 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 37
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 124 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 11
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 49 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 213
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>01_01_1097 +
8682250-8682337,8682406-8682474,8683014-8683222,
8683468-8683657,8684619-8685010,8685610-8686098
Length = 478
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 586 SCPRETSGSFDIVHIKDSTGH 648
SCP +T GS D+V I+ + GH
Sbjct: 61 SCPLKTEGSIDMVGIRRNKGH 81
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 301 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 405
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 400 GPKNVPYLVTHDGRTI-RYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDHGRRNLGR 576
GP+ P +VTHD + + + + + ++ + I T R W + R+L +
Sbjct: 147 GPEVDPTIVTHDAKDLYKAGEKRLGTDEKTFIRIFTERSWAHMASVASAYHHMYDRSLEK 206
Query: 577 VGTSCPRETSGSFDI 621
V S ETSG+F++
Sbjct: 207 VVKS---ETSGNFEL 218
>03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020
Length = 241
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 448 RYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDHGRRNLGRVGTS 588
R+PDP++ D AT W S+ + G RR+ GR T+
Sbjct: 43 RWPDPVLPRPDLAARCRATAPSWARSAAAEGRWRRQQRRSEGRTATT 89
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 197 FSGLRFRSKHTSDDSSGKSPGASTRATCG 111
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,989
Number of Sequences: 37544
Number of extensions: 442189
Number of successful extensions: 1374
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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