Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1072
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   3e-41
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           29   3.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.3  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   7.6  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  165 bits (401), Expect = 3e-41
 Identities = 82/133 (61%), Positives = 98/133 (73%), Gaps = 2/133 (1%)
 Frame = +1

Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
           AGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD
Sbjct: 508 AGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHD 567

Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRET-SG 609
            RTIRYPDP IKVND++ +DI T ++        G      G RN+GRVG    RE  +G
Sbjct: 568 ARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAG 627

Query: 610 SFDIVHIKDSTGH 648
           SFDIVH+KD+TGH
Sbjct: 628 SFDIVHVKDATGH 640



 Score =  159 bits (387), Expect = 1e-39
 Identities = 72/82 (87%), Positives = 76/82 (92%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V KIVKQRLIK+DGKVRTD TY
Sbjct: 485 VKKIVKQRLIKIDGKVRTDTTY 506


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 506 RDYGLHQV*VRELVMITGGVTWGAWAHRVRER--HPAPSTLC 625
           R Y  HQ   R     T   TW +W  + + R  HP P+ LC
Sbjct: 16  RSYMRHQTKTRST---TSQTTWRSWTWKTQSRHTHPTPAILC 54


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 151 EES--SEVCFDRKRSPENCE 204
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 150 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 13
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 228 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 112
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,133,851
Number of Sequences: 59808
Number of extensions: 503229
Number of successful extensions: 1226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)