Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1072
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   181   9e-46
BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   181   9e-46
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   181   9e-46
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   181   9e-46
AY113445-1|AAM29450.1| 1524|Drosophila melanogaster RE29777p pro...    30   2.4  
AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-P...    30   2.4  
AE013599-2523|AAF57823.2| 1524|Drosophila melanogaster CG10936-P...    30   2.4  
AE013599-2522|AAM68482.1| 1524|Drosophila melanogaster CG10936-P...    30   2.4  
BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p pro...    30   3.1  
AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p pro...    30   3.1  
AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA...    30   3.1  
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    29   7.2  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    29   7.2  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    29   7.2  

>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  181 bits (440), Expect = 9e-46
 Identities = 88/137 (64%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
 Frame = +1

Query: 244 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 423
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 424 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRE 600
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ ++        G  C   G RNLGRVGT   RE
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199

Query: 601 T-SGSFDIVHIKDSTGH 648
              GSFDIVHIKDS GH
Sbjct: 200 RHPGSFDIVHIKDSQGH 216



 Score =  152 bits (368), Expect = 5e-37
 Identities = 71/82 (86%), Positives = 74/82 (90%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V KIV QRL+KV GKVRTDPTY
Sbjct: 61  VTKIVMQRLVKVYGKVRTDPTY 82


>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  181 bits (440), Expect = 9e-46
 Identities = 88/137 (64%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
 Frame = +1

Query: 244 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 423
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 424 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRE 600
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ ++        G  C   G RNLGRVGT   RE
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199

Query: 601 T-SGSFDIVHIKDSTGH 648
              GSFDIVHIKDS GH
Sbjct: 200 RHPGSFDIVHIKDSQGH 216



 Score =  157 bits (382), Expect = 9e-39
 Identities = 73/82 (89%), Positives = 76/82 (92%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V KIV QRL+KVDGKVRTDPTY
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTY 82


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  181 bits (440), Expect = 9e-46
 Identities = 88/137 (64%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
 Frame = +1

Query: 244 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 423
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 424 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRE 600
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ ++        G  C   G RNLGRVGT   RE
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199

Query: 601 T-SGSFDIVHIKDSTGH 648
              GSFDIVHIKDS GH
Sbjct: 200 RHPGSFDIVHIKDSQGH 216



 Score =  157 bits (382), Expect = 9e-39
 Identities = 73/82 (89%), Positives = 76/82 (92%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V KIV QRL+KVDGKVRTDPTY
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTY 82


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  181 bits (440), Expect = 9e-46
 Identities = 88/137 (64%), Positives = 101/137 (73%), Gaps = 2/137 (1%)
 Frame = +1

Query: 244 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 423
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 424 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRE 600
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ ++        G  C   G RNLGRVGT   RE
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199

Query: 601 T-SGSFDIVHIKDSTGH 648
              GSFDIVHIKDS GH
Sbjct: 200 RHPGSFDIVHIKDSQGH 216



 Score =  157 bits (382), Expect = 9e-39
 Identities = 73/82 (89%), Positives = 76/82 (92%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V KIV QRL+KVDGKVRTDPTY
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTY 82


>AY113445-1|AAM29450.1| 1524|Drosophila melanogaster RE29777p
           protein.
          Length = 1524

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 487 QLDIATTRLWTSSSLSPGTCDDHGRRNLGRVGTSCPRETSGSFDIVHIKD 636
           Q+D +T    T+    PG    H R+   R  +S PR TS    + H  D
Sbjct: 752 QMDSSTPATSTTVGTGPGKFVPHIRKYQPRTTSSAPRTTSSKVKVQHFDD 801


>AE014134-2514|AAF53406.2| 1025|Drosophila melanogaster CG12636-PA
           protein.
          Length = 1025

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 457 DPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDH 555
           + ++ +N SI L+I    +W + SL PG  +DH
Sbjct: 650 EEVLPLNYSILLEIYQCNIWKNRSLDPGWSEDH 682


>AE013599-2523|AAF57823.2| 1524|Drosophila melanogaster CG10936-PB,
           isoform B protein.
          Length = 1524

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 487 QLDIATTRLWTSSSLSPGTCDDHGRRNLGRVGTSCPRETSGSFDIVHIKD 636
           Q+D +T    T+    PG    H R+   R  +S PR TS    + H  D
Sbjct: 752 QMDSSTPATSTTVGTGPGKFVPHIRKYQPRTTSSAPRTTSSKVKVQHFDD 801


>AE013599-2522|AAM68482.1| 1524|Drosophila melanogaster CG10936-PA,
           isoform A protein.
          Length = 1524

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 487 QLDIATTRLWTSSSLSPGTCDDHGRRNLGRVGTSCPRETSGSFDIVHIKD 636
           Q+D +T    T+    PG    H R+   R  +S PR TS    + H  D
Sbjct: 752 QMDSSTPATSTTVGTGPGKFVPHIRKYQPRTTSSAPRTTSSKVKVQHFDD 801


>BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 43  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 219
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p
           protein.
          Length = 561

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 43  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 219
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 18  KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 74


>AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 43  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 219
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 444  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 286
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 444  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 286
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 444  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 286
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,479,615
Number of Sequences: 53049
Number of extensions: 733384
Number of successful extensions: 1946
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)