Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1072
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   150   7e-37
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.0  
U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like pr...    27   8.7  
AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like ...    27   8.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  150 bits (364), Expect = 7e-37
 Identities = 75/133 (56%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
 Frame = +1

Query: 259 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 438
           GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DG
Sbjct: 84  GFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDG 143

Query: 439 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT-CDDHGRRNLGRVGTSCPRE-TSGS 612
           RTIRYPDP +KVND+I  +I+T ++  S    PG      G RN+GRVG    RE   G+
Sbjct: 144 RTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGA 203

Query: 613 FDIVHIKDSTGHT 651
            DI+HIKDS GH+
Sbjct: 204 SDIIHIKDSAGHS 216



 Score =  122 bits (293), Expect = 3e-28
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +2

Query: 14  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 193
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 194 KIVKQRLIKVDGKVRT 241
           KI+ QR+++VDGKVRT
Sbjct: 62  KILTQRVVRVDGKVRT 77


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 325 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 456
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 482  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 318
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>U80450-5|AAB37830.1|  587|Caenorhabditis elegans Kinesin-like
           protein protein 15 protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 557 GGVTWGAWAHRVRERHPAPSTLCTSR 634
           GG+T GA A R   R P P+T  T R
Sbjct: 46  GGITIGAAARRPPSRLPTPTTPATGR 71


>AB032080-1|BAA92263.2|  587|Caenorhabditis elegans kinesin like
           protein-15 protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 557 GGVTWGAWAHRVRERHPAPSTLCTSR 634
           GG+T GA A R   R P P+T  T R
Sbjct: 46  GGITIGAAARRPPSRLPTPTTPATGR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,063
Number of Sequences: 27780
Number of extensions: 354348
Number of successful extensions: 931
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)