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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1072
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   153   7e-38
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             153   1e-37
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   153   1e-37
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.66 
At1g29760.1 68414.m03639 expressed protein                             31   0.66 
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    29   2.7  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    29   2.7  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    29   2.7  
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   2.7  
At5g05030.1 68418.m00534 expressed protein contains similarity t...    28   4.7  
At3g14075.1 68416.m01778 lipase class 3 family protein low simil...    28   6.2  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  153 bits (372), Expect = 7e-38
 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
 Frame = +1

Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
           AGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+D
Sbjct: 84  AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143

Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
           GRTIRYPDPLIK ND+I+LD+   ++        G      G RN GRVG    RE   G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203

Query: 610 SFDIVHIKDSTGH 648
           SF+ +HI+DSTGH
Sbjct: 204 SFETIHIQDSTGH 216



 Score =  138 bits (335), Expect = 2e-33
 Identities = 63/82 (76%), Positives = 71/82 (86%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V+ I+ QR I+VDGKVRTD TY
Sbjct: 61  VISILMQRHIQVDGKVRTDKTY 82


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  153 bits (371), Expect = 1e-37
 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
 Frame = +1

Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
           AGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+D
Sbjct: 84  AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143

Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
           GRTIRYPDPLIK ND+I+LD+   ++        G      G RN GRVG    RE   G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203

Query: 610 SFDIVHIKDSTGH 648
           SF+ +HI+DSTGH
Sbjct: 204 SFETIHIQDSTGH 216



 Score =  138 bits (335), Expect = 2e-33
 Identities = 63/82 (76%), Positives = 71/82 (86%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V+ I+ QR I+VDGKVRTD TY
Sbjct: 61  VISILMQRHIQVDGKVRTDKTY 82


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  153 bits (371), Expect = 1e-37
 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
 Frame = +1

Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435
           AGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+D
Sbjct: 84  AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143

Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609
           GRTIRYPDPLIK ND+I+LD+   ++        G      G RN GRVG    RE   G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203

Query: 610 SFDIVHIKDSTGH 648
           SF+ +HI+DSTGH
Sbjct: 204 SFETIHIQDSTGH 216



 Score =  138 bits (335), Expect = 2e-33
 Identities = 63/82 (76%), Positives = 71/82 (86%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253
           V+ I+ QR I+VDGKVRTD TY
Sbjct: 61  VISILMQRHIQVDGKVRTDKTY 82


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 132 KHSRNLWGPVDGLGAYTPPSLSNIHAL 52
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 243 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 151
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 155 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYL 256
           N  ++A+T NE+   +K+RL   D ++R D  YL
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYL 736


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 155 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYL 256
           N  ++A+T NE+   +K+RL   D ++R D  YL
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYL 736


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 155 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYL 256
           N  ++A+T NE+   +K+RL   D ++R D  YL
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYL 737


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 222 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 106
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At5g05030.1 68418.m00534 expressed protein contains similarity to
           carboxyl-terminal proteinase contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 363

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 403 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDHGRRNLG 573
           PKN     +     I  P+  + +  + +  +A  + WT   L+P T D HG    G
Sbjct: 67  PKNQVKGESERKNIIECPNGTVPIIRNTKKYVANAQYWTEKHLNPLTIDSHGTHIAG 123


>At3g14075.1 68416.m01778 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 642

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 551 SSQVPGLKLDEV-HNLVVAMSNWMESLTLIS 462
           S+  P L++D V H L+ A + W+E+++ +S
Sbjct: 39  SASRPSLRIDRVSHRLIQAPATWLETISTLS 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,195
Number of Sequences: 28952
Number of extensions: 339517
Number of successful extensions: 955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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