BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1072 (651 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 153 7e-38 At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 153 1e-37 At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 153 1e-37 At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.66 At1g29760.1 68414.m03639 expressed protein 31 0.66 At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 29 2.7 At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 29 2.7 At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 29 2.7 At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 2.7 At5g05030.1 68418.m00534 expressed protein contains similarity t... 28 4.7 At3g14075.1 68416.m01778 lipase class 3 family protein low simil... 28 6.2 >At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal protein S4, Arabidopsis thaliana, PIR:T48480 Length = 262 Score = 153 bits (372), Expect = 7e-38 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%) Frame = +1 Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435 AGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+D Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143 Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609 GRTIRYPDPLIK ND+I+LD+ ++ G G RN GRVG RE G Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 Query: 610 SFDIVHIKDSTGH 648 SF+ +HI+DSTGH Sbjct: 204 SFETIHIQDSTGH 216 Score = 138 bits (335), Expect = 2e-33 Identities = 63/82 (76%), Positives = 71/82 (86%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253 V+ I+ QR I+VDGKVRTD TY Sbjct: 61 VISILMQRHIQVDGKVRTDKTY 82 >At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) Length = 262 Score = 153 bits (371), Expect = 1e-37 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%) Frame = +1 Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435 AGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+D Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143 Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609 GRTIRYPDPLIK ND+I+LD+ ++ G G RN GRVG RE G Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 Query: 610 SFDIVHIKDSTGH 648 SF+ +HI+DSTGH Sbjct: 204 SFETIHIQDSTGH 216 Score = 138 bits (335), Expect = 2e-33 Identities = 63/82 (76%), Positives = 71/82 (86%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253 V+ I+ QR I+VDGKVRTD TY Sbjct: 61 VISILMQRHIQVDGKVRTDKTY 82 >At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains ribosomal protein S4 signature from residues 8 to 22 Length = 261 Score = 153 bits (371), Expect = 1e-37 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%) Frame = +1 Query: 256 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 435 AGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+D Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143 Query: 436 GRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG-TCDDHGRRNLGRVGTSCPRET-SG 609 GRTIRYPDPLIK ND+I+LD+ ++ G G RN GRVG RE G Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203 Query: 610 SFDIVHIKDSTGH 648 SF+ +HI+DSTGH Sbjct: 204 SFETIHIQDSTGH 216 Score = 138 bits (335), Expect = 2e-33 Identities = 63/82 (76%), Positives = 71/82 (86%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 Query: 188 VLKIVKQRLIKVDGKVRTDPTY 253 V+ I+ QR I+VDGKVRTD TY Sbjct: 61 VISILMQRHIQVDGKVRTDKTY 82 >At4g10710.1 68417.m01751 transcriptional regulator-related similar to chromatin-specific transcription elongation factor FACT 140 kDa subunit (GI:5499741) [Homo sapiens] Length = 1074 Score = 31.1 bits (67), Expect = 0.66 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 132 KHSRNLWGPVDGLGAYTPPSLSNIHAL 52 KHS +LWG D L TPP+ ++ L Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70 >At1g29760.1 68414.m03639 expressed protein Length = 526 Score = 31.1 bits (67), Expect = 0.66 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 243 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 151 S+LTFP +R CF F F + RRFL Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225 >At4g08180.3 68417.m01353 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 813 Score = 29.1 bits (62), Expect = 2.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 155 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYL 256 N ++A+T NE+ +K+RL D ++R D YL Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYL 736 >At4g08180.2 68417.m01352 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 813 Score = 29.1 bits (62), Expect = 2.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 155 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYL 256 N ++A+T NE+ +K+RL D ++R D YL Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYL 736 >At4g08180.1 68417.m01351 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 814 Score = 29.1 bits (62), Expect = 2.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 155 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYL 256 N ++A+T NE+ +K+RL D ++R D YL Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYL 737 >At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, putative / steroid 5-alpha-reductase, putative identical to gi:1280611; contains a steroid 5-alpha reductase, C-terminal domain Length = 262 Score = 29.1 bits (62), Expect = 2.7 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 Query: 222 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 106 TF R C + P A +FL+ GKH+R WGP Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45 >At5g05030.1 68418.m00534 expressed protein contains similarity to carboxyl-terminal proteinase contains Pfam profile PF03080: Arabidopsis proteins of unknown function Length = 363 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/57 (26%), Positives = 24/57 (42%) Frame = +1 Query: 403 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCDDHGRRNLG 573 PKN + I P+ + + + + +A + WT L+P T D HG G Sbjct: 67 PKNQVKGESERKNIIECPNGTVPIIRNTKKYVANAQYWTEKHLNPLTIDSHGTHIAG 123 >At3g14075.1 68416.m01778 lipase class 3 family protein low similarity to calmodulin-binding heat-shock protein CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam profile PF01764: Lipase, PF03893: Lipase 3 N-terminal region Length = 642 Score = 27.9 bits (59), Expect = 6.2 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 551 SSQVPGLKLDEV-HNLVVAMSNWMESLTLIS 462 S+ P L++D V H L+ A + W+E+++ +S Sbjct: 39 SASRPSLRIDRVSHRLIQAPATWLETISTLS 69 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,842,195 Number of Sequences: 28952 Number of extensions: 339517 Number of successful extensions: 955 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 913 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 949 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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