Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1071
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.4
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 1.4
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.4
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 2.4
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.1
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 5.5
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.5
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 25 7.3
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 9.6
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 259 LISATYFKQFLKQNRPIPSFAYS 191
+I ++F++F QNR + SFAYS
Sbjct: 11 VIQKSFFEEFNSQNREMGSFAYS 33
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 259 LISATYFKQFLKQNRPIPSFAYS 191
+I ++F++F QNR + SFAYS
Sbjct: 11 VIQKSFFEEFNSQNREMGSFAYS 33
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 259 LISATYFKQFLKQNRPIPSFAYS 191
+I ++F++F QNR + SFAYS
Sbjct: 11 VIQKSFFEEFNSQNREMGSFAYS 33
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 491 FHDFNSHLELFAHYSNVEFCKIFD 562
F+ HL+LF H + + F K+F+
Sbjct: 297 FYYAEEHLKLFTHVTEISFVKLFE 320
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 216 LFCFKNCLK*VAEISTNMKKSGLGNL 293
+FC ++CL + + +KK+GLG +
Sbjct: 650 IFCKESCLPSIKNVEGTVKKTGLGGV 675
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 316 MSIL-GICLKLMYYLGKCFAHKSALIS-KFPYWKL-LHTY 426
+SIL ICL YL KC+ H L S + + K HTY
Sbjct: 60 LSILHNICLASFLYLSKCYYHTHILTSVRLDFCKSHAHTY 99
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 273 KSGLGNLCAGGLYCNEHPWNLL 338
+S GNLC+ L N+ P NLL
Sbjct: 646 RSNSGNLCSKDLLSNDSPSNLL 667
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 497 HEMCFNFLTNQL-NNTENQPA 438
HE CF FL N +N EN+ A
Sbjct: 48 HEQCFRFLANSCSDNNENRAA 68
>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 652 YLFIYLETFTHQHLYLIIIGIT*LPIKLAIIKYL 551
YLF Y E F + II+ +T K I+K L
Sbjct: 39 YLFTYKEAFVFNTVVFIIVFLTGWAAKSIIVKLL 72
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 321 AHYNKGRQRISCLTHFFSYSCLFLQLIL 238
A+YN GR+++ C T S S +F + IL
Sbjct: 74 AYYNTGREKVIC-TRKMSASSIFQKAIL 100
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 541 DIAIMSKQFQMTIEIMKCVLIS*PTNSTIQKTSLQGELYKY 419
DIA++ K FQ++ I+K + I PT + I + GE+ Y
Sbjct: 727 DIALVEK-FQLSSPIIKSISIVSPTANRIACLTESGEVTVY 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,697
Number of Sequences: 5004
Number of extensions: 50230
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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