Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1071
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        30   1.9  
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_2369| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 457 IQKTSLQGELYKYVVVSNRETY*SKLICVQNTFLNSTLILSKFQGCSLQ*RPP 299
           ++ +SLQ + Y++++  N       L    NTFLN  + L K    +   RPP
Sbjct: 334 VEMSSLQKQYYRWILTKNYRALNKGLKGNSNTFLNIVMELKKCSNHASLTRPP 386


>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 289 LPNPLFFIFVLISATYFKQFLKQNRPIPSFA 197
           L  PLF +    S    +QFL+  RPIP +A
Sbjct: 536 LNGPLFVVVEYASQGNLRQFLRARRPIPEYA 566


>SB_2369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 282 LGNLCAGGLYCNEHPWNLLKINVLFRKVFCTQ 377
           +G +     +C E P++LL   VL+RK FCT+
Sbjct: 307 MGKVLYRNKFCTE-PYSLLMGKVLYRKKFCTE 337


>SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 319 SILGICLKLMYYLGKC 366
           SILGICL  +YY  KC
Sbjct: 72  SILGICLDYLYYYDKC 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,505
Number of Sequences: 59808
Number of extensions: 350145
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)