Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1071
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   8.9  

>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -1

Query: 466 NSTIQKTSLQGELYKYVVVSNRET-Y*SKLICVQNTFLNSTLILSKFQGCSLQ*RPPAHK 290
           N+TIQ +++  +L KYV+  ++ T Y S LIC+     N+ LI   ++   +Q R  A  
Sbjct: 2   NNTIQNSTITDDL-KYVMTLDKLTEYLSCLICLPGALCNAILIYLIWKRTPIQMRSYAIY 60

Query: 289 LPNPLFFIFVLISATYF 239
           + N   F F     ++F
Sbjct: 61  ILNFALFDFATCIISFF 77


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 646 FIYLETFTHQHLYLIIIGIT*LPIKLAIIKYLTKF 542
           F +L TFTHQH   ++  +T    +L +   L +F
Sbjct: 212 FKFLYTFTHQHFVFVVAMVTPRESRLPMTTRLIRF 246


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 646 FIYLETFTHQHLYLIIIGIT*LPIKLAIIKYLTKF 542
           F +L TFTHQH   ++  +T    +L +   L +F
Sbjct: 212 FKFLYTFTHQHFVFVVAMVTPRESRLPMTTRLIRF 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,202
Number of Sequences: 27780
Number of extensions: 285556
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)