Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1071
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi...    28   6.3  
At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi...    28   6.3  
At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing...    28   6.3  
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    28   6.3  
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi...    28   6.3  
At5g01730.1 68418.m00091 expressed protein                             27   8.3  

>At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 210 IGLFCFKNCLK*VAEISTNMKKSG 281
           IGLFC KN  + V E+ T+M+K G
Sbjct: 553 IGLFCDKNNAEKVYEMLTDMEKEG 576


>At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 210 IGLFCFKNCLK*VAEISTNMKKSG 281
           IGLFC KN  + V E+ T+M+K G
Sbjct: 553 IGLFCDKNNAEKVYEMLTDMEKEG 576


>At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 613 LYLIIIGIT*LPIKLAIIKYLTKFDIAIMSKQFQMTIEIMKCV 485
           ++L  +G+T LP+ L +  Y++        +Q  +  EIM CV
Sbjct: 549 IFLFCLGLTVLPVNLVVGSYISNM---FEDRQILLVSEIMVCV 588


>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/97 (20%), Positives = 43/97 (44%)
 Frame = -1

Query: 613 LYLIIIGIT*LPIKLAIIKYLTKFDIAIMSKQFQMTIEIMKCVLIS*PTNSTIQKTSLQG 434
           ++L  +G+T LP+ L +  Y++        +Q  +  EIM C+ I    +  I  T  Q 
Sbjct: 557 IFLFCLGLTVLPVNLVVGSYISNM---FEDRQILLASEIMVCIGIVLSFHVVIPYTVPQY 613

Query: 433 ELYKYVVVSNRETY*SKLICVQNTFLNSTLILSKFQG 323
            +  +++  + E      + + +  ++S L    + G
Sbjct: 614 VISGFIMFVSAEVLEGVNLSLLSRVMSSRLSRGTYNG 650


>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 766

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 210 IGLFCFKNCLK*VAEISTNMKKSG 281
           IGLFC KN  + V E+ T+M+K G
Sbjct: 553 IGLFCDKNNTEKVYEMLTDMEKEG 576


>At5g01730.1 68418.m00091 expressed protein
          Length = 1192

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 485 NTFHDFNSHLELFAHYSNVEFCKIFD 562
           N   D  SHLEL ++ +N E C++F+
Sbjct: 511 NLPEDSGSHLELQSNKANAEACEVFE 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,991
Number of Sequences: 28952
Number of extensions: 245885
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)