BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1071 (658 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containi... 28 6.3 At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containi... 28 6.3 At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing... 28 6.3 At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing... 28 6.3 At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi... 28 6.3 At5g01730.1 68418.m00091 expressed protein 27 8.3 >At5g28460.1 68418.m03456 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 766 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +3 Query: 210 IGLFCFKNCLK*VAEISTNMKKSG 281 IGLFC KN + V E+ T+M+K G Sbjct: 553 IGLFCDKNNAEKVYEMLTDMEKEG 576 >At5g28370.1 68418.m03445 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 727 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +3 Query: 210 IGLFCFKNCLK*VAEISTNMKKSG 281 IGLFC KN + V E+ T+M+K G Sbjct: 553 IGLFCDKNNAEKVYEMLTDMEKEG 576 >At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing protein low similarity to SP|P51564 Tetracycline resistance protein, class H {Pasteurella multocida}, SP|P39843 Multidrug resistance protein 2 (Multidrug-efflux transporter 2) {Bacillus subtilis}; contains Pfam profile PF03105: SPX domain Length = 699 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = -1 Query: 613 LYLIIIGIT*LPIKLAIIKYLTKFDIAIMSKQFQMTIEIMKCV 485 ++L +G+T LP+ L + Y++ +Q + EIM CV Sbjct: 549 IFLFCLGLTVLPVNLVVGSYISNM---FEDRQILLVSEIMVCV 588 >At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing protein weak similarity to SP|P51564 Tetracycline resistance protein, class H {Pasteurella multocida}, SP|P39843 Multidrug resistance protein 2 (Multidrug-efflux transporter 2) {Bacillus subtilis}; contains Pfam profile PF03105: SPX domain Length = 707 Score = 27.9 bits (59), Expect = 6.3 Identities = 20/97 (20%), Positives = 43/97 (44%) Frame = -1 Query: 613 LYLIIIGIT*LPIKLAIIKYLTKFDIAIMSKQFQMTIEIMKCVLIS*PTNSTIQKTSLQG 434 ++L +G+T LP+ L + Y++ +Q + EIM C+ I + I T Q Sbjct: 557 IFLFCLGLTVLPVNLVVGSYISNM---FEDRQILLASEIMVCIGIVLSFHVVIPYTVPQY 613 Query: 433 ELYKYVVVSNRETY*SKLICVQNTFLNSTLILSKFQG 323 + +++ + E + + + ++S L + G Sbjct: 614 VISGFIMFVSAEVLEGVNLSLLSRVMSSRLSRGTYNG 650 >At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 766 Score = 27.9 bits (59), Expect = 6.3 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +3 Query: 210 IGLFCFKNCLK*VAEISTNMKKSG 281 IGLFC KN + V E+ T+M+K G Sbjct: 553 IGLFCDKNNTEKVYEMLTDMEKEG 576 >At5g01730.1 68418.m00091 expressed protein Length = 1192 Score = 27.5 bits (58), Expect = 8.3 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 485 NTFHDFNSHLELFAHYSNVEFCKIFD 562 N D SHLEL ++ +N E C++F+ Sbjct: 511 NLPEDSGSHLELQSNKANAEACEVFE 536 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,897,991 Number of Sequences: 28952 Number of extensions: 245885 Number of successful extensions: 493 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 493 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1373722560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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