Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1070
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   146   3e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.59 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.0  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.6  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   9.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  146 bits (353), Expect = 3e-36
 Identities = 65/98 (66%), Positives = 83/98 (84%)
 Frame = +2

Query: 209 KNRQTREHLLVFFTNQEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 388
           K +   E  L     +E++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 389 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 502
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWG 144



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 36/53 (67%), Positives = 45/53 (84%)
 Frame = +1

Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
           G  +G PHTVP KV+GKCGSVTVRL+P PRG G+V+APV K+ LQ+AG++DCY
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCY 196



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +3

Query: 150 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 147 RAHDHGRDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 22
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 258 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 368
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 334 LFLYRHDLKNLIIQGRAEEEINDLEFLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 161
           L +Y   L+NL+ QG+A E +N ++ +          +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 SLPIKNSRSLISSSARP*MMRFLRSCLYRNK 335
           ++ +K SR+    S  P MMRF+  C++  K
Sbjct: 34  TIVLKRSRNAQGFSLEPIMMRFIELCVHLRK 64


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 141 HDHG--RDHD--RVHEDRHGLYLHRVIRNRRENRHVHRLEQRPPLLNDG 7
           H HG  R H+  R H  RH  +      ++R++R+  R E  P   NDG
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRREHSP---NDG 192


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 188 RPSCSRRKNRQTREHLLVFFTNQEFEIIDFFLGPSLNDE 304
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,306
Number of Sequences: 5004
Number of extensions: 55317
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)