Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1070
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 145 2e-35
07_01_0756 + 5819367-5820038,5820847-5821005 140 7e-34
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 62 4e-10
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.3
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 29 3.3
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 28 5.7
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 28 7.5
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 28 7.5
04_03_1045 - 21972877-21972945,21973191-21973559,21973699-21974136 27 9.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 145 bits (352), Expect = 2e-35
Identities = 67/85 (78%), Positives = 77/85 (90%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVA
Sbjct: 73 KEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNK 156
Score = 90.6 bits (215), Expect = 9e-19
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++G+PHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG++D +
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVF 206
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = +3
Query: 150 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 140 bits (340), Expect = 7e-34
Identities = 65/85 (76%), Positives = 76/85 (89%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVA
Sbjct: 76 KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNK 159
Score = 92.3 bits (219), Expect = 3e-19
Identities = 38/53 (71%), Positives = 48/53 (90%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG++D +
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVF 209
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/36 (63%), Positives = 32/36 (88%)
Frame = +3
Query: 150 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +1
Query: 514 KPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVF 94
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 368 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 463
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 296 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 475
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 476 LPV 484
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 430 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 314
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 645 YTSHLKKLLRNWRRHNTSTTRIRNQPDCYGTTLAGDLA 532
Y ++++L+++W H+ R + PD G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 520 HTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGV 645
H V CKV G + + DP G G+ P++ L +A V
Sbjct: 86 HKVSCKVAGGLAKLRLSFQSDPSGQGLGEEGDPRRQLFVAPV 127
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 504 TSRKATHRPLQGHRQVWFRNSPADS*SSW 590
T K H L G + W+ N PA+S SW
Sbjct: 240 TKAKVIHLALDGIARFWYFNLPANSIYSW 268
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = -2
Query: 282 RKKSMISNS*LVKKTSKCSR---VCRFFLREQDGRVW*QEPTLSGLPCRAHDHGRDHDRV 112
R++++++ + L+ C +C R D ++ L C AH G D
Sbjct: 1006 RRRAIVTLTKLIPTVQLCITRLLICLSVARNNDDL---RKDAAEALCCLAHALGEDFTIF 1062
Query: 111 HEDRHGLYLHRVIRNRRENRHVHRLEQRPPLLNDGL 4
H L + +R R+ + +RL +R PL+++ L
Sbjct: 1063 VSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENL 1098
>04_03_1045 - 21972877-21972945,21973191-21973559,21973699-21974136
Length = 291
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 423 RKSPLPFEALLSLLSCQFYQSEEVTGVTSRKATH 524
R LP E LLS+LSC + T V SR+ H
Sbjct: 38 RLGELPDELLLSILSCLTTRQAVQTSVLSRRWRH 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,571,402
Number of Sequences: 37544
Number of extensions: 413239
Number of successful extensions: 1171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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