Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1070
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   141   3e-34
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    28   5.1  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   6.7  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  141 bits (342), Expect = 3e-34
 Identities = 69/85 (81%), Positives = 76/85 (89%)
 Frame = +2

Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
           +EFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
           TAIRGAI+ AKL+V+PVRRGYWGNK
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 43/53 (81%), Positives = 47/53 (88%)
 Frame = +1

Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
           G ++G PHTVPCKVTGKC SV VRLIP PRGTGIVSAPVPKKLL MAG++DCY
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCY 219



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +3

Query: 153 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 373 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 287
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 373 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 287
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 147 RAHDHGRDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQR 28
           R+ D  RD DR + DR   Y  +   +RRE     R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 639 SHLKKLLRNWRRHNTSTTRIRNQPDCYGTTLAGDL 535
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 153 PCRAHDHGRDHDRVHEDRHG-LYLHRVIRNRRENRHVHR 40
           P RAH+ G+ H+R H   HG    H   RNR  N   +R
Sbjct: 60  PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 96


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 153  PCRAHDHGRDHDRVHEDRHG-LYLHRVIRNRRENRHVHR 40
            P RAH+ G+ H+R H   HG    H   RNR  N   +R
Sbjct: 904  PARAHNRGQHHNRGH--HHGPPRNHNQDRNRHRNHDGNR 940


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,920
Number of Sequences: 27780
Number of extensions: 333029
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)