Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1070
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 2e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 2e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 158 3e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 158 3e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 158 3e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 158 3e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.1
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 29 2.7
At3g63100.1 68416.m07087 glycine-rich protein 29 2.7
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.8
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 6.3
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 6.3
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 6.3
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 6.3
At3g01450.1 68416.m00069 expressed protein 28 6.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.3
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 8.3
At2g41300.1 68415.m05100 strictosidine synthase family protein s... 27 8.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (386), Expect = 2e-39
Identities = 70/85 (82%), Positives = 81/85 (95%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+P+RRGYWGNK
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNK 158
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 208
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (385), Expect = 2e-39
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNK 167
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 217
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++++WVPVTKLGRLV G I ++E IYL SLP+K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 158 bits (383), Expect = 3e-39
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 158 bits (383), Expect = 3e-39
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 158 bits (383), Expect = 3e-39
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 158 bits (383), Expect = 3e-39
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 433
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 434 TAIRGAIILAKLSVLPVRRGYWGNK 508
TAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = +1
Query: 499 G*QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQDCY 657
G ++GKPHTVPCKVTGKCGSVTVR++P PRG+GIV+A VPKK+LQ AG+ D +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVF 216
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +3
Query: 156 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 299 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 478
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 479 PV 484
V
Sbjct: 209 QV 210
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 514 KPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKLLQMAGVQD 651
K T P + G G+ V L P GTG+++ + +L+MAGV++
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -2
Query: 516 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 337
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 336 VCFCTGMILRTSSFR 292
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 505 QVGKPHTVPCKVTGKCGSVTVRLIPDPRGTGIVSAPVPKKL 627
+ G TV SV +RL PDP+G PV K L
Sbjct: 47 ETGNTTTVTYAEGNSTSSVPIRLFPDPQGRQCYKLPVRKDL 87
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 135 HGRDH----DRVHEDRHGLYLHRVIRNRRENRHVH 43
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 141 HDHGRDHDRVHEDRHGLYLH 82
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 365 AFVAIGDNNGHIGLGVKCSKE 427
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 345 PARVCFCTGMILRTSSFRDGPRKKSMISNS*LVKKTSK 232
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 129 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 22
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 129 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 22
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 129 RDHDRVHEDRHGLYLHRVIRNRRENRHVHRLEQRPP 22
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 516 LSYLLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 337
L LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 336 VCF 328
CF
Sbjct: 222 TCF 224
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 520 HTVPCKVTGKCGSVTVRL 573
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 171 PTLSGLPCRAHDHGRDHDRV-HEDRHGLYLHRVIRNRRENRHVH 43
P S R HD GRD DR H DR + R+RRE H
Sbjct: 882 PRKSSTRERDHDLGRDRDRERHRDRDRQHDLNRDRDRREKSSSH 925
>At2g41300.1 68415.m05100 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]; contains strictosidine synthase
domain PF03088; protein alignments support a CG
non-consensus donor splice site.
Length = 394
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 511 GKPHTVPCKVTGKCGSVTVRLIPDPRG 591
GKPH V K++GK G + + ++ D G
Sbjct: 337 GKPHAVAVKLSGKTGEI-MEILEDSEG 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,439,834
Number of Sequences: 28952
Number of extensions: 313974
Number of successful extensions: 890
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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