Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1069
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 43 5e-05
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.2
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 26 4.2
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 26 4.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 5.5
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 5.5
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 7.3
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 7.3
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 7.3
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 9.7
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +2
Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376
+F +LI G +RNPS++ LFS AILGFAL+E
Sbjct: 27 IFSNLISGTSRNPSVRPHLFSMAILGFALTE 57
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 216 AAKFIGAGAATVG 254
AAK+IGAG AT+G
Sbjct: 4 AAKYIGAGLATIG 16
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 281 FQYQLRNQLSHCRCTSTNEFGSRVN 207
F Y L QLS +CTS F + N
Sbjct: 763 FNYDLPEQLSRLKCTSKANFAKKEN 787
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 354 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAILHMRFQCILSGVD---SQESNVW 524
FW+S + C+ + CC +L+K+ + ++T ++L F+ V+ + + V
Sbjct: 684 FWMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVL 743
Query: 525 KPH 533
+PH
Sbjct: 744 RPH 746
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 480 QCILSGVDSQESNVWKPH 533
QCI S D E ++WKP+
Sbjct: 387 QCIASVADDNELHIWKPN 404
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -3
Query: 423 AKSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMREPKTVPIPAPEPAIPLS 244
++++ + ++ P A++ R+AY N G L+ T PIP P+ P+
Sbjct: 83 SRNNVSPVLTDLPPYAAEHPFSRLAYFNPAFNSPGILS----ASGLTSPIPESRPSTPMD 138
Query: 243 LHQHQ 229
HQ +
Sbjct: 139 NHQER 143
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 292 AEDCSNTSSGTSYPTVAAP 236
A D S SSGTS P +AAP
Sbjct: 648 AGDTSKVSSGTSTPRMAAP 666
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +2
Query: 35 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 148
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 187 PHRSLRTLTLLPNSLVLVQRQWDSWFRSWYWNSLRLPHHRL 309
P + +T+L + + ++ + WY+NS RL HRL
Sbjct: 53 PSSKMAFVTMLTVRAANGENEVENTQQDWYYNSTRLLVHRL 93
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 250 WDSWFRSWYWNSLRLPHH 303
WDS+ R W+ +++P H
Sbjct: 218 WDSFIRRAKWSGVKIPQH 235
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 193 RSLRTLTLLPNSLVLVQRQWDSWFR 267
+S L L+P+ L +++WDSWF+
Sbjct: 411 KSSNKLKLVPS---LARKEWDSWFK 432
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 109 HLQQYPPIHRWYLLSLHSSLQC 174
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 123 PTHTQMVPAVPTQLSAVRS 179
P HT VPAVP+Q+ + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,027
Number of Sequences: 5004
Number of extensions: 60528
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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