Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1069
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 35 0.066
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.47
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 31 0.61
03_06_0422 + 33818887-33819996 31 0.81
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 3.3
08_02_0263 + 15007377-15007650,15008050-15008116,15008616-150086... 29 3.3
07_03_1191 + 24690936-24691029,24691184-24691377 29 3.3
07_03_0318 - 16721615-16722154 29 3.3
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 3.3
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 29 4.3
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 4.3
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 29 4.3
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 5.7
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 5.7
08_02_1172 + 24898290-24899141,24900864-24901328 28 7.6
04_04_1030 - 30249160-30250403,30250787-30251666 28 7.6
03_01_0517 - 3874834-3875196 28 7.6
02_01_0775 + 5775949-5777385 28 7.6
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 34.7 bits (76), Expect = 0.066
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = -3
Query: 291 PKTVPIPAPEPAIPLSLHQHQ*IWQQSQCP**PMWSGRTALQRAV*GQQVPSVYGWVLLQ 112
P T P P P P SL Q +Q Q ++ + ALQ + +P Y L+
Sbjct: 989 PPTPQQPLPPPPPPPSLQQLHHPYQHQQQQQQQLYHHQNALQPQIPSNSIPQAY----LR 1044
Query: 111 VVAPVQSCRRWQTWLQGRSVWRQT 40
P+Q Q LQ W+QT
Sbjct: 1045 TQQPLQQLPLMQQQLQPAQAWQQT 1068
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 41 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 169
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 17 RTLYKQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 142
R L +CRQ + C CH++ LC G + S P T G
Sbjct: 30 RELMPIEGICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 427 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 257
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 218 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 48
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>08_02_0263 +
15007377-15007650,15008050-15008116,15008616-15008676,
15008964-15009005
Length = 147
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = -2
Query: 289 EDCSNTSSGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTAGTICVWV----G 122
E + G++ PTVAAPA + A + +V DR C G A C+ V G
Sbjct: 2 ETLAPDGGGSADPTVAAPAATDPAVAGQTEANPMVAVDRLVVVC-GCAPPSCLLVILVGG 60
Query: 121 TAASGRTSAEL 89
A G S+ L
Sbjct: 61 DAEDGAASSSL 71
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 41 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 151
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>07_03_0318 - 16721615-16722154
Length = 179
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -2
Query: 250 TVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTSA 95
T APAP A + L T A GTA + GTAA+ T+A
Sbjct: 103 TAGAPAPAGTADKVAPLGTPAPAVSPAAAGTAGTAASAVATAGTAAAAGTAA 154
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 43 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 216
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 217 LPNS 228
+PN+
Sbjct: 239 MPNA 242
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 172 CGPSRPHRSLRTLTLLPNSLVLVQRQWDSWFRSWYWNSLRLPHHRLCQEPL 324
C + LR + P R W + WY + R HRL +EPL
Sbjct: 540 CEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKCRYKQHRLAREPL 590
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = -2
Query: 475 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 296
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 295 GAEDCSNTSSGTSYPT 248
GAE S S+ + PT
Sbjct: 391 GAESVS--SNARAQPT 404
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 123 PTHTQMVPAVPTQLSAVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
PT T+M+ + Q+SA FQT TK D K IG A G
Sbjct: 359 PTITEMLRGLTFQISANSFFQTN--TKQADVLYKLIGESAGLKG 400
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 436 NSLESEEQQERHHKTEQTHSLRQ 368
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 195 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 49
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 43 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 219
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 220 P 222
P
Sbjct: 100 P 100
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 185 LEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVYIRC 18
++G +C+E R + Y CK + C EDG G R + SGG YI C
Sbjct: 244 IQGGNCKEASRSRQ------TYMCKENSYCYEVEDG-AGYRCNCSGGYTGNPYIGC 292
>03_01_0517 - 3874834-3875196
Length = 120
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 429 KLFTFKNTTTAILHMRFQCILSGVDSQESNVWK 527
+L TT +FQC++ GV +N WK
Sbjct: 81 RLVILAETTPGGSKAKFQCVVWGVPGSRANTWK 113
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 128 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVYIRCGA 12
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,811,257
Number of Sequences: 37544
Number of extensions: 462724
Number of successful extensions: 1800
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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