BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1069 (659 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 64 1e-10 D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 64 1e-10 AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 64 1e-10 U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 31 0.72 AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 30 1.3 Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr... 29 2.9 AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. 29 2.9 AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. 29 2.9 Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 3.9 AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 3.9 Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 5.1 Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 28 6.8 U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 28 6.8 AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical ... 28 6.8 Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 8.9 >D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase subunit protein. Length = 92 Score = 63.7 bits (148), Expect = 1e-10 Identities = 29/31 (93%), Positives = 31/31 (100%) Frame = +2 Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376 VFG+L+IGYARNPSLKQQLFSYAILGFALSE Sbjct: 45 VFGALVIGYARNPSLKQQLFSYAILGFALSE 75 Score = 44.0 bits (99), Expect = 1e-04 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = +3 Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254 A R TT KDIDSAAK+IGAGAATVG Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVG 34 >D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase subunit protein. Length = 92 Score = 63.7 bits (148), Expect = 1e-10 Identities = 29/31 (93%), Positives = 31/31 (100%) Frame = +2 Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376 VFG+L+IGYARNPSLKQQLFSYAILGFALSE Sbjct: 45 VFGALVIGYARNPSLKQQLFSYAILGFALSE 75 Score = 44.0 bits (99), Expect = 1e-04 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = +3 Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254 A R TT KDIDSAAK+IGAGAATVG Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVG 34 >AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical protein Y82E9BR.3 protein. Length = 116 Score = 63.7 bits (148), Expect = 1e-10 Identities = 29/31 (93%), Positives = 31/31 (100%) Frame = +2 Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376 VFG+L+IGYARNPSLKQQLFSYAILGFALSE Sbjct: 69 VFGALVIGYARNPSLKQQLFSYAILGFALSE 99 Score = 44.0 bits (99), Expect = 1e-04 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = +3 Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254 A R TT KDIDSAAK+IGAGAATVG Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVG 58 >U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 25 protein. Length = 672 Score = 31.1 bits (67), Expect = 0.72 Identities = 13/45 (28%), Positives = 18/45 (40%) Frame = +2 Query: 26 YKQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 160 Y N C P + C+ T C+S + +G CCP T Sbjct: 103 YSTNTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147 >AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical protein Y45F3A.8 protein. Length = 404 Score = 30.3 bits (65), Expect = 1.3 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Frame = -1 Query: 254 SHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 96 SHC T + RV ++ C P CR +LC SRY M YC K C Sbjct: 307 SHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363 >Z70208-4|CAC42306.1| 879|Caenorhabditis elegans Hypothetical protein F54B11.3b protein. Length = 879 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 291 PKTVPIPAPEPAIPLSLHQ 235 PK +P+PAP PA P+ +HQ Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857 >Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical protein F54B11.3a protein. Length = 1111 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 291 PKTVPIPAPEPAIPLSLHQ 235 PK +P+PAP PA P+ +HQ Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857 >AF200707-1|AAF15884.1| 879|Caenorhabditis elegans UNC-84B protein. Length = 879 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 291 PKTVPIPAPEPAIPLSLHQ 235 PK +P+PAP PA P+ +HQ Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857 >AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein. Length = 1111 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 291 PKTVPIPAPEPAIPLSLHQ 235 PK +P+PAP PA P+ +HQ Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857 >Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein E01G6.1 protein. Length = 1391 Score = 28.7 bits (61), Expect = 3.9 Identities = 10/30 (33%), Positives = 13/30 (43%) Frame = +2 Query: 95 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 184 C+ C + D CCPY + C A P Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218 >AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical protein F28A10.1 protein. Length = 311 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -3 Query: 420 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 292 KSSR I ++ I KP E N C+ + FLA PM E Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63 >Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical protein C08B6.6 protein. Length = 218 Score = 28.3 bits (60), Expect = 5.1 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 588 PVDAHCRCNTHQSLHHYEGEV 526 P+ CRCNT +LH EG V Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118 >Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical protein ZK1067.7 protein. Length = 373 Score = 27.9 bits (59), Expect = 6.8 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +2 Query: 20 TLYKQNAVCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 151 T+ + +C+QT C Q ++ C +++ CSS + G+CC Sbjct: 323 TVLQCQPICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370 >U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical protein D1044.7 protein. Length = 400 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/45 (26%), Positives = 19/45 (42%) Frame = +2 Query: 26 YKQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 160 + QN C P + C + C+S + ++G CCP T Sbjct: 70 HSQNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114 >AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical protein C50D2.2 protein. Length = 589 Score = 27.9 bits (59), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 208 LTLLPNSLVLVQRQWDSWFRSWYWNSL 288 L+LL N+L++V W +W R W S+ Sbjct: 518 LSLLINTLMMVHLAWITWLRLVVWMSI 544 >Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein W05B2.2 protein. Length = 1278 Score = 27.5 bits (58), Expect = 8.9 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +2 Query: 86 LQLCTGATTCSSTHPYTDGTCCPYTA 163 +Q C+G C TH + CCP A Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,470,113 Number of Sequences: 27780 Number of extensions: 379121 Number of successful extensions: 1542 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1537 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1476380920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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