Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1069
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    64   1e-10
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    64   1e-10
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    64   1e-10
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    31   0.72 
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.    29   2.9  
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.    29   2.9  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376
           VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 45  VFGALVIGYARNPSLKQQLFSYAILGFALSE 75



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
           A R   TT   KDIDSAAK+IGAGAATVG
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVG 34


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376
           VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 45  VFGALVIGYARNPSLKQQLFSYAILGFALSE 75



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
           A R   TT   KDIDSAAK+IGAGAATVG
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVG 34


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKQQLFSYAILGFALSE 376
           VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 69  VFGALVIGYARNPSLKQQLFSYAILGFALSE 99



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +3

Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
           A R   TT   KDIDSAAK+IGAGAATVG
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVG 58


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 26  YKQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 160
           Y  N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 103 YSTNTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -1

Query: 254 SHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 96
           SHC  T    +   RV   ++ C    P CR   +LC  SRY   M  YC K    C
Sbjct: 307 SHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363


>Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical
           protein F54B11.3b protein.
          Length = 879

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
           protein F54B11.3a protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.
          Length = 879

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 291 PKTVPIPAPEPAIPLSLHQ 235
           PK +P+PAP PA P+ +HQ
Sbjct: 840 PKPIPVPAPTPA-PVIIHQ 857


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 95  CTGATTCSSTHPYTDGTCCPYTALCSAVLP 184
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 420 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 292
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 588 PVDAHCRCNTHQSLHHYEGEV 526
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 20  TLYKQNAVCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 151
           T+ +   +C+QT    C Q   ++  C  +++   CSS +    G+CC
Sbjct: 323 TVLQCQPICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 26  YKQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 160
           + QN  C     P       +  C   + C+S +  ++G CCP T
Sbjct: 70  HSQNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114


>AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical
           protein C50D2.2 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 208 LTLLPNSLVLVQRQWDSWFRSWYWNSL 288
           L+LL N+L++V   W +W R   W S+
Sbjct: 518 LSLLINTLMMVHLAWITWLRLVVWMSI 544


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 86  LQLCTGATTCSSTHPYTDGTCCPYTA 163
           +Q C+G   C  TH   +  CCP  A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,113
Number of Sequences: 27780
Number of extensions: 379121
Number of successful extensions: 1542
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)