Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1068
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    83   3e-17
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    29   0.76 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   4.0  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    26   4.0  
SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce...    25   7.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.3  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.3  

>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 37/73 (50%), Positives = 50/73 (68%)
 Frame = +2

Query: 260 MKIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 439
           +KI TH G FH DE LA +ML+ L ++  A+I+R+RD   L+ CDI+VDVG  +D   K 
Sbjct: 5   VKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIKY 63

Query: 440 YDHHQAGFNETLS 478
           +DHHQ  FN+T S
Sbjct: 64  FDHHQREFNDTFS 76



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 32/44 (72%)
 Frame = +1

Query: 514 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFI 645
           +LSSAGL+Y ++G ++I  +  +   +  +DL+ +Y+KVY+SF+
Sbjct: 82  RLSSAGLIYKHFGREVIHAVLPQ-LKINEQDLETLYEKVYQSFV 124


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +2

Query: 323 KNLPQYKDAEIIRTRDLNKLNDC-DIVVDVGSVF---DHEKKRYDHHQAGFNETLSTLRP 490
           KNL    D  +I TR +N   +   IV DV  +    DH++  YD H++ F +       
Sbjct: 115 KNLASEMD--VINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDK 172

Query: 491 ELGDSYKL 514
            L D  KL
Sbjct: 173 SLKDEKKL 180


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 429  SWSKTLPTSTTISQSFSLFRSLV 361
            SW+ T P+      SF LFRSL+
Sbjct: 1578 SWATTCPSRRLACNSFQLFRSLL 1600


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -3

Query: 452 GDDHNASFHGQKHFLHQQLYHSHSAYLDLLCG*SQHLCIEEDSLA*SKLELHRSGILRRE 273
           G    A+ + QK+   QQL   + +  +LL   ++ LC++ D L  S  E   S IL  +
Sbjct: 664 GTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLR-SVFEEDSSKILSLQ 722

Query: 272 SQSSSLNT 249
            ++ +L +
Sbjct: 723 KENENLQS 730


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 386 DCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRP-ELGDSYKLNLVQQALCM 541
           DC++++  G  FD +  R  H +  ++  +S  +   L    + N+ +  +C+
Sbjct: 120 DCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMFKVGICL 172


>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 568 QLKEESTSLTNEDLKLIYKKVYES 639
           QL++ +  + N D K+ ++K+YES
Sbjct: 44  QLRDYTRGIVNSDSKIDFQKLYES 67


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 472 LEYLEA*TRRQL*IKLSSAGLVYAYYGEDIIQQL 573
           L+ LE   RR + +K  +  ++Y Y+G+  +  L
Sbjct: 95  LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNL 128


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 461 FNETLSTLRPELGDSYKLNLVQQALCML 544
           F+ TLS +  ++ D + LNL+   LC+L
Sbjct: 839 FSYTLSYVCEQIPDHWNLNLLADFLCIL 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,737
Number of Sequences: 5004
Number of extensions: 48744
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)