BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1068 (646 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 91 9e-19 02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 32 0.45 02_02_0707 + 13144147-13144788,13145115-13148663 29 2.4 10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 29 4.2 02_05_0908 + 32668706-32669140,32669772-32669957,32670316-326704... 29 4.2 02_02_0672 - 12814610-12815703,12815743-12816226 29 4.2 12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 28 5.5 07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 28 5.5 >02_05_0345 - 28142434-28142658,28143087-28143158,28143252-28143371, 28143483-28143674,28144919-28145017,28145448-28145594, 28146310-28146513 Length = 352 Score = 90.6 bits (215), Expect = 9e-19 Identities = 35/69 (50%), Positives = 50/69 (72%) Frame = +2 Query: 263 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 442 ++GTH+G FHCDE L C++++ Q+ A+++RTRD L+ D V+DVG V+D + RY Sbjct: 31 RVGTHNGSFHCDEALGCYLIRLTSQFAGADVVRTRDPQILDTLDAVLDVGGVYDPSRHRY 90 Query: 443 DHHQAGFNE 469 DHHQ GFNE Sbjct: 91 DHHQKGFNE 99 Score = 42.7 bits (96), Expect = 2e-04 Identities = 21/44 (47%), Positives = 31/44 (70%) Frame = +1 Query: 514 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFI 645 KLSSAGLVY ++G++II KE S +ED+ +Y +Y+SF+ Sbjct: 108 KLSSAGLVYKHFGKEII--AKELEVSEDHEDVHRLYLAIYKSFV 149 >02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498, 1625603-1625887,1626016-1626030,1626339-1626419, 1626909-1627322,1627423-1627719,1627801-1629864 Length = 3057 Score = 31.9 bits (69), Expect = 0.45 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +2 Query: 377 KLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL 514 K + D + +VG+ HE + H A +TLS + P+ G++ KL Sbjct: 2668 KASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKL 2713 >02_02_0707 + 13144147-13144788,13145115-13148663 Length = 1396 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = +3 Query: 105 TLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHYC 242 TLNN ++ + + +IT+++ + ++P C+L+ A + H C Sbjct: 992 TLNNRDRIVLLWQGVFEHITHIVQSTVMP--CNLVEKAVFGLLHIC 1035 >10_08_0444 + 17971724-17971797,17972119-17972176,17972613-17972708, 17972974-17973000,17973019-17973075,17973604-17973687, 17974304-17974384,17974928-17975071,17975218-17975309, 17975998-17976079,17976818-17977000,17977360-17977438, 17977555-17977613,17978162-17978290,17979188-17979367, 17980312-17980446,17980528-17980602,17980890-17980947, 17981035-17981282,17981594-17981733,17981961-17982132, 17982797-17982887,17983099-17983221,17984951-17985032, 17985715-17985835,17985886-17985915,17986427-17986549 Length = 940 Score = 28.7 bits (61), Expect = 4.2 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +2 Query: 284 VFHCDEVLACF-MLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAG 460 + H + V +C +L + K A + D N+L++C ++ GS + Y HQ Sbjct: 597 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLPYYGVHQVH 656 Query: 461 F 463 F Sbjct: 657 F 657 >02_05_0908 + 32668706-32669140,32669772-32669957,32670316-32670414, 32671010-32671147,32672276-32672533,32675009-32675272, 32675426-32675571,32675762-32675839,32676746-32676875, 32677040-32677286,32677374-32677423,32677767-32677869, 32678332-32678354 Length = 718 Score = 28.7 bits (61), Expect = 4.2 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +2 Query: 374 NKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELGDS-YKLNLVQQALCMLT 547 +K+ CD +D G + K+ Q FN++ ST + GD+ + + +QA+ + T Sbjct: 385 SKIPSCDGFIDCGRGINIGKQNQLSRQQWFNDSASTACFDTGDNGFHYGIYEQAVLLTT 443 >02_02_0672 - 12814610-12815703,12815743-12816226 Length = 525 Score = 28.7 bits (61), Expect = 4.2 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Frame = +2 Query: 296 DEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETL 475 D ACF LK+L +++ T LN+L D + ++ +FD + DHH F+ T+ Sbjct: 442 DAATACF-LKSLTSGLSMDVL-TVLLNRLVYADKIWEINRIFDGKDFVPDHHV--FDLTI 497 Query: 476 STL----RPELGDSYKLNLVQQAL 535 T YKLNL+ A+ Sbjct: 498 RTFCRVGYCHYRTFYKLNLILDAM 521 >12_02_1032 + 25542420-25542573,25543511-25543577,25543816-25543918, 25544435-25544505,25544639-25544702,25545260-25545316, 25545435-25545593,25545967-25546035,25546111-25546202, 25546579-25546657,25546923-25547088,25547480-25547604, 25547737-25548078,25548271-25548432,25548520-25548624, 25548766-25548860,25548948-25549044,25549848-25550165, 25550228-25550296 Length = 797 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKLNLVQQA 532 +G + D + YD F+E + T + +L S LNLVQ A Sbjct: 269 LGYIVDVHMQEYDKEAIYFDEAVRTAKRQLLKSRVLNLVQPA 310 >07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022, 27985590-27985744,27985956-27986461,27986551-27986703, 27987146-27987485,27987558-27987822,27987897-27988634, 27989734-27989779,27989849-27990223,27991511-27991567, 27991640-27992438 Length = 1453 Score = 28.3 bits (60), Expect = 5.5 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Frame = +2 Query: 269 GTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDH 448 G+H+GV V AC M N P+ KD R +KL + ++V VG VFD ++ YD Sbjct: 334 GSHEGVDRPPCVQACEM--NTPE-KDRVY---RHDSKLRE-EMVPKVGMVFDSYEEAYDF 386 Query: 449 HQ-----AGFNETLSTLRP 490 ++ AGF+ S +P Sbjct: 387 YERYSYHAGFDIKKSRNKP 405 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,190,295 Number of Sequences: 37544 Number of extensions: 255500 Number of successful extensions: 526 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 525 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1596695220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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