SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1068
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...    91   9e-19
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    32   0.45 
02_02_0707 + 13144147-13144788,13145115-13148663                       29   2.4  
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    29   4.2  
02_05_0908 + 32668706-32669140,32669772-32669957,32670316-326704...    29   4.2  
02_02_0672 - 12814610-12815703,12815743-12816226                       29   4.2  
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439...    28   5.5  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    28   5.5  

>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 35/69 (50%), Positives = 50/69 (72%)
 Frame = +2

Query: 263 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 442
           ++GTH+G FHCDE L C++++   Q+  A+++RTRD   L+  D V+DVG V+D  + RY
Sbjct: 31  RVGTHNGSFHCDEALGCYLIRLTSQFAGADVVRTRDPQILDTLDAVLDVGGVYDPSRHRY 90

Query: 443 DHHQAGFNE 469
           DHHQ GFNE
Sbjct: 91  DHHQKGFNE 99



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/44 (47%), Positives = 31/44 (70%)
 Frame = +1

Query: 514 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFI 645
           KLSSAGLVY ++G++II   KE   S  +ED+  +Y  +Y+SF+
Sbjct: 108 KLSSAGLVYKHFGKEII--AKELEVSEDHEDVHRLYLAIYKSFV 149


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 377  KLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL 514
            K +  D + +VG+   HE    + H A   +TLS + P+ G++ KL
Sbjct: 2668 KASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKL 2713


>02_02_0707 + 13144147-13144788,13145115-13148663
          Length = 1396

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 105  TLNNEFYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNFRHYC 242
            TLNN    ++ +   + +IT+++ + ++P  C+L+  A +   H C
Sbjct: 992  TLNNRDRIVLLWQGVFEHITHIVQSTVMP--CNLVEKAVFGLLHIC 1035


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 284 VFHCDEVLACF-MLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAG 460
           + H + V +C  +L  +   K A +    D N+L++C  ++  GS  +     Y  HQ  
Sbjct: 597 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLPYYGVHQVH 656

Query: 461 F 463
           F
Sbjct: 657 F 657


>02_05_0908 +
           32668706-32669140,32669772-32669957,32670316-32670414,
           32671010-32671147,32672276-32672533,32675009-32675272,
           32675426-32675571,32675762-32675839,32676746-32676875,
           32677040-32677286,32677374-32677423,32677767-32677869,
           32678332-32678354
          Length = 718

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 374 NKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELGDS-YKLNLVQQALCMLT 547
           +K+  CD  +D G   +  K+     Q  FN++ ST   + GD+ +   + +QA+ + T
Sbjct: 385 SKIPSCDGFIDCGRGINIGKQNQLSRQQWFNDSASTACFDTGDNGFHYGIYEQAVLLTT 443


>02_02_0672 - 12814610-12815703,12815743-12816226
          Length = 525

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +2

Query: 296 DEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETL 475
           D   ACF LK+L      +++ T  LN+L   D + ++  +FD +    DHH   F+ T+
Sbjct: 442 DAATACF-LKSLTSGLSMDVL-TVLLNRLVYADKIWEINRIFDGKDFVPDHHV--FDLTI 497

Query: 476 STL----RPELGDSYKLNLVQQAL 535
            T            YKLNL+  A+
Sbjct: 498 RTFCRVGYCHYRTFYKLNLILDAM 521


>12_02_1032 +
           25542420-25542573,25543511-25543577,25543816-25543918,
           25544435-25544505,25544639-25544702,25545260-25545316,
           25545435-25545593,25545967-25546035,25546111-25546202,
           25546579-25546657,25546923-25547088,25547480-25547604,
           25547737-25548078,25548271-25548432,25548520-25548624,
           25548766-25548860,25548948-25549044,25549848-25550165,
           25550228-25550296
          Length = 797

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKLNLVQQA 532
           +G + D   + YD     F+E + T + +L  S  LNLVQ A
Sbjct: 269 LGYIVDVHMQEYDKEAIYFDEAVRTAKRQLLKSRVLNLVQPA 310


>07_03_1591 +
           27967065-27967090,27967236-27968054,27984940-27985022,
           27985590-27985744,27985956-27986461,27986551-27986703,
           27987146-27987485,27987558-27987822,27987897-27988634,
           27989734-27989779,27989849-27990223,27991511-27991567,
           27991640-27992438
          Length = 1453

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +2

Query: 269 GTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDH 448
           G+H+GV     V AC M  N P+ KD      R  +KL + ++V  VG VFD  ++ YD 
Sbjct: 334 GSHEGVDRPPCVQACEM--NTPE-KDRVY---RHDSKLRE-EMVPKVGMVFDSYEEAYDF 386

Query: 449 HQ-----AGFNETLSTLRP 490
           ++     AGF+   S  +P
Sbjct: 387 YERYSYHAGFDIKKSRNKP 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,190,295
Number of Sequences: 37544
Number of extensions: 255500
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -