Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1068
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_33178| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             29   3.2  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   28   7.5  
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.9  
SB_22026| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                27   9.9  
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)                 27   9.9  

>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score =  109 bits (262), Expect = 2e-24
 Identities = 47/74 (63%), Positives = 54/74 (72%)
 Frame = +2

Query: 263 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 442
           KIGTH+G FHCDEVLAC+MLK LP+Y  A+IIRTRD   L  CD+VVDV  V+D  K RY
Sbjct: 12  KIGTHNGTFHCDEVLACYMLKQLPEYSHADIIRTRDPKILEQCDVVVDVSGVYDASKHRY 71

Query: 443 DHHQAGFNETLSTL 484
           DHHQ  F   + TL
Sbjct: 72  DHHQRSFTGCMQTL 85



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +1

Query: 514 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFI 645
           KLSSAGLVY ++G  ++ Q+ +      ++ L  +Y K+YE+ I
Sbjct: 95  KLSSAGLVYLHFGRRVLSQVMQMPED--HQALDKVYDKIYENLI 136


>SB_33178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -3

Query: 497 RVQASRYSRSH*NRLGDDHNASFHGQKHFLHQQLYHSHSAY 375
           R QA++ SR H   + +D  ++FHGQK   H+ L HS +A+
Sbjct: 70  RPQATQ-SRQHMGAIDEDSTSAFHGQK---HETLVHSKAAF 106


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 54  IPN*IYHNR*HSTVCVETLNNEF-YNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNF 230
           +PN   HN  HST    +LNN   +N +     + ++T    +  LP T +  NS +   
Sbjct: 198 LPNTTRHNSLHSTTRHNSLNNTTRHNSLTNTTRHNSLTNTTRHNSLPNT-ARHNSLTNTT 256

Query: 231 RHYCLSS 251
           RH  L++
Sbjct: 257 RHNSLTN 263


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 469 LIKTGLVMIITLLFMVKNTSYINNYITVI 383
           +I T ++MIIT+   + + + INN+I +I
Sbjct: 92  IIITIIIMIITITITINHITIINNHINII 120


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 287 FHCDEVLACFMLKNLPQYKDAEIIRTR 367
           + CDE   CF  KN P+    + +RT+
Sbjct: 271 YRCDECCECFTQKNTPEDTPNDSLRTK 297


>SB_22026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 150 YRNITYVMLNRILPRTCSLLNSASYNFRHY 239
           Y N T+   + ++  +C +L S S+NF  Y
Sbjct: 39  YENTTFTFADTLVRSSCEVLISLSFNFSFY 68


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 536 TRPAELSL-IYSCL-RVQASRYSRSH*NRLGDDHNASFHGQKHFLHQQLYHSHSAYL 372
           TR +++ L  Y C  +++  R+   H +    +H+   H   H  H Q +H H  ++
Sbjct: 22  TRHSDMHLRFYGCYHKLKNPRHRYHHHHHHQHNHHQHHHHHNHHHHHQQHHHHHHHI 78


>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
          Length = 309

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 449 HQAGFNETLSTLRPELGDSYK-LNLVQQALCML 544
           H AGF ET S L   +G  +K LNL  + L ++
Sbjct: 28  HHAGFKETESLLEKAIGQGHKILNLSHRELTVI 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,250,783
Number of Sequences: 59808
Number of extensions: 323164
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)