Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1068
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-8|CAB05549.1| 340|Caenorhabditis elegans Hypothetical pr... 120 1e-27
Z81042-6|CAB02797.1| 340|Caenorhabditis elegans Hypothetical pr... 120 1e-27
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 33 0.23
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF022967-12|AAB69873.2| 467|Caenorhabditis elegans Hypothetical... 28 4.9
Z71180-7|CAK55177.1| 647|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z71180-6|CAI79160.1| 702|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z71180-4|CAA94893.2| 723|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL021475-8|CAK55192.1| 647|Caenorhabditis elegans Hypothetical ... 27 8.6
AL021475-7|CAI79248.1| 702|Caenorhabditis elegans Hypothetical ... 27 8.6
AL021475-5|CAA16314.2| 723|Caenorhabditis elegans Hypothetical ... 27 8.6
AL021475-3|CAI79247.1| 465|Caenorhabditis elegans Hypothetical ... 27 8.6
AF178536-1|AAD56365.1| 723|Caenorhabditis elegans EGL-9 protein. 27 8.6
>Z83113-8|CAB05549.1| 340|Caenorhabditis elegans Hypothetical
protein C27H6.8 protein.
Length = 340
Score = 120 bits (288), Expect = 1e-27
Identities = 49/73 (67%), Positives = 57/73 (78%)
Frame = +2
Query: 266 IGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYD 445
IGTH G FHCDE ACFMLK LPQ+KD I+RTRD +L CDI+VDVG +FDH K+RYD
Sbjct: 5 IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64
Query: 446 HHQAGFNETLSTL 484
HHQ GF +T+ TL
Sbjct: 65 HHQRGFTDTMRTL 77
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +1
Query: 514 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFI 645
KLSSAGLVYA+YG ++I Q+ + S + D L Y ++YE F+
Sbjct: 85 KLSSAGLVYAHYGREVINQILGGNVSSSMID--LFYHRLYEQFV 126
>Z81042-6|CAB02797.1| 340|Caenorhabditis elegans Hypothetical
protein C27H6.8 protein.
Length = 340
Score = 120 bits (288), Expect = 1e-27
Identities = 49/73 (67%), Positives = 57/73 (78%)
Frame = +2
Query: 266 IGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYD 445
IGTH G FHCDE ACFMLK LPQ+KD I+RTRD +L CDI+VDVG +FDH K+RYD
Sbjct: 5 IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64
Query: 446 HHQAGFNETLSTL 484
HHQ GF +T+ TL
Sbjct: 65 HHQRGFTDTMRTL 77
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +1
Query: 514 KLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFI 645
KLSSAGLVYA+YG ++I Q+ + S + D L Y ++YE F+
Sbjct: 85 KLSSAGLVYAHYGREVINQILGGNVSSSMID--LFYHRLYEQFV 126
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 329 LPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 439
L + DAEI++ R N LN+C +V + +++ EK R
Sbjct: 1396 LTEISDAEILKKRSANALNNCGMVAWIMTLYTPEKPR 1432
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 96 CVETLNNE-FYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNF 230
C ++NE Y + K N+ R+ TY LNR+L + S + +AS F
Sbjct: 200 CSFIMDNEAIYEITKVNLGVRSPTYTHLNRLLAQVVSSI-TASLRF 244
>AF022967-12|AAB69873.2| 467|Caenorhabditis elegans Hypothetical
protein C13A2.1 protein.
Length = 467
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 42 LKYYIPN*IYHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRT 197
+KYY + Y NR C L +F K N N+TY + ++LP T
Sbjct: 400 MKYY--DLYYFNRRSGITCPGPLYCKFKQHPKINCMQANVTYSSMRKLLPIT 449
>Z71180-7|CAK55177.1| 647|Caenorhabditis elegans Hypothetical
protein F22E12.4e protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 375 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 425
>Z71180-6|CAI79160.1| 702|Caenorhabditis elegans Hypothetical
protein F22E12.4d protein.
Length = 702
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 451 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 501
>Z71180-4|CAA94893.2| 723|Caenorhabditis elegans Hypothetical
protein F22E12.4a protein.
Length = 723
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 451 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 501
>AL021475-8|CAK55192.1| 647|Caenorhabditis elegans Hypothetical
protein F22E12.4e protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 375 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 425
>AL021475-7|CAI79248.1| 702|Caenorhabditis elegans Hypothetical
protein F22E12.4d protein.
Length = 702
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 451 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 501
>AL021475-5|CAA16314.2| 723|Caenorhabditis elegans Hypothetical
protein F22E12.4a protein.
Length = 723
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 451 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 501
>AL021475-3|CAI79247.1| 465|Caenorhabditis elegans Hypothetical
protein F22E12.4c protein.
Length = 465
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 193 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 243
>AF178536-1|AAD56365.1| 723|Caenorhabditis elegans EGL-9 protein.
Length = 723
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 407 VGSVFDHEKKRYDHHQAGFNETLSTLRPELGDSYKL---NLVQQALCMLTM 550
+ SV H KKR DH G + + + P G Y N V+ C+ T+
Sbjct: 451 IDSVIQHFKKRIDHDIGGRSRAMLAIYPGNGTRYVKHVDNPVKDGRCITTI 501
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,828
Number of Sequences: 27780
Number of extensions: 257361
Number of successful extensions: 746
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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